LTR_LTR9D
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NameLTR9D
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RepbaseLTR9D
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TypeLTR
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Emergence43.0 Mya
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Dfam Id
Description :
Consensus sequence
:
tgatacaggagctaaaaagaaattatttaggcagatagtgagggtaagagagtcctcggtaaggtttcccttttaataaaaagcagcccccaaatcatttcttttctaacaaagagcagcctgnaaaatcgagctgcagacatagataagcaagctggaagcttgcacgggtgaatgccggcagctgtgccaataggaaaaggctacctgggggccaggcatgttcaacatggaggctccatcttcccttttctttgtcaccacgtgtgcagtaaagaagcaggcaacatggcgccggccaggtagagancccatctgcataataaaagattagggtggggcggccagcttcttcgcgcgctatgtaaacggcacacctggtccgaccaatctcttgggccctatgtaaatcagacaccgcctcctcaagctcgtctataaaaccccgtgcatttcgccgcggaaccggaagacccactcgggagccccctctctctgcaggagagagagctnttctcttttctctttctttcgcctattaaacctccgctcttaaactcactccttgtgtgtccgcgtcctcgatttccttggcgtgagacaacgaacctcgggtatttaccccagacaaacgacgccgcttca
Repeats structure
:
Peak overlapping
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZNF680 | 118 | 28.9 | Moderately correlated | |
| 2 | ZNF766 | 57 | 43.0 | Highly correlated | |
| 3 | ZNF679 | 23 | 28.9 | Moderately correlated | |
| 4 | ZNF589 | 21 | 28.9 | Moderately correlated | |
| 5 | ZNF681 | 21 | 28.9 | Moderately correlated | |
| 6 | ZNF175 | 20 | 94.0 | Weakly correlated | |
| 7 | ZNF197 | 15 | 99.0 | Weakly correlated | |
| 8 | ZNF382 | 14 | 99.0 | Weakly correlated | |
| 9 | ZNF506 | 13 | 28.9 | Moderately correlated | |
| 10 | ZKSCAN1 | 11 | 160.0 | Weakly correlated | |
| 11 | ZKSCAN8 | 10 | 160.0 | Weakly correlated | |
| 12 | ZNF705B | 9 | 28.9 | Moderately correlated | |
| 13 | ZNF584 | 9 | 99.0 | Weakly correlated | |
| 14 | ZNF18 | 8 | 160.0 | Weakly correlated | |
| 15 | ZNF394 | 7 | 99.0 | Weakly correlated | |
| 16 | ZNF723 | 6 | 15.2 | Weakly correlated | |
| 17 | ZNF705D | 6 | 28.9 | Moderately correlated | |
| 18 | ZNF534 | 6 | 19.6 | Weakly correlated | |
| 19 | ZNF2 | 6 | 99.0 | Weakly correlated | |
| 20 | ZNF28 | 5 | 28.9 | Moderately correlated | |
| 21 | ZIM3 | 4 | 87.0 | Weakly correlated | |
| 22 | ZNF202 | 4 | 160.0 | Weakly correlated | |
| 23 | ZNF479 | 4 | 6.4 | Weakly correlated | |
| 24 | ZNF101 | 4 | 43.0 | Highly correlated | |
| 25 | ZNF350 | 3 | 99.0 | Weakly correlated | |
| 26 | ZNF610 | 3 | 28.9 | Moderately correlated | |
| 27 | ZNF486 | 3 | 8.6 | Weakly correlated | |
| 28 | ZNF695 | 2 | 28.9 | Moderately correlated | |
| 29 | ZNF84 | 2 | 99.0 | Weakly correlated | |
| 30 | ZNF597 | 2 | 94.0 | Weakly correlated | |
| 31 | ZNF554 | 2 | 99.0 | Weakly correlated | |
| 32 | ZNF674 | 2 | 99.0 | Weakly correlated | |
| 33 | ZNF441 | 2 | 43.0 | Highly correlated | |
| 34 | ZNF425 | 2 | 94.0 | Weakly correlated | |
| 35 | ZNF317 | 2 | 99.0 | Weakly correlated | |
| 36 | ZNF257 | 2 | 0.0 | Weakly correlated | |
| 37 | ZNF780A | 1 | 43.0 | Highly correlated | |
| 38 | ZNF735 | 1 | 28.9 | Moderately correlated | |
| 39 | ZNF707 | 1 | 74.0 | Weakly correlated | |
| 40 | ZNF799 | 1 | 43.0 | Highly correlated | |
| 41 | ZNF468 | 1 | 28.9 | Moderately correlated | |
| 42 | ZNF596 | 1 | 94.0 | Weakly correlated | |
| 43 | ZNF701 | 1 | 28.9 | Moderately correlated | |
| 44 | ZNF8 | 1 | 99.0 | Weakly correlated | |
| 45 | ZNF263 | 1 | 180.0 | Weakly correlated | |
| 46 | ZFP57 | 1 | 87.0 | Weakly correlated | |
| 47 | ZFP69B | 1 | 99.0 | Weakly correlated | |
| 48 | ZKSCAN5 | 1 | 160.0 | Weakly correlated | |
| 49 | ZNF12 | 1 | 99.0 | Weakly correlated | |
| 50 | ZNF136 | 1 | 74.0 | Weakly correlated | |
| 51 | ZNF141 | 1 | 43.0 | Highly correlated | |
| 52 | ZNF169 | 1 | 94.0 | Weakly correlated | |
| 53 | ZNF182 | 1 | 99.0 | Weakly correlated | |
| 54 | ZNF189 | 1 | 99.0 | Weakly correlated | |
| 55 | ZNF585A | 1 | 99.0 | Weakly correlated | |
| 56 | ZNF274 | 1 | 99.0 | Weakly correlated | |
| 57 | ZNF282 | 1 | 319.0 | Weakly correlated | |
| 58 | ZNF324 | 1 | 99.0 | Weakly correlated | |
| 59 | ZNF429 | 1 | 28.9 | Moderately correlated | |
| 60 | ZFP37 | 1 | 99.0 | Weakly correlated | |
| 61 | ZNF485 | 1 | 94.0 | Weakly correlated | |
| 62 | ZNF490 | 1 | 43.0 | Highly correlated | |
| 63 | ZNF563 | 1 | 28.9 | Moderately correlated | |
| 64 | ZNF568 | 1 | 99.0 | Weakly correlated |
KZFPs Motif in Repeats
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZNF680 | 28 | 28.9 | Moderately correlated | |
| 2 | ZNF681 | 20 | 28.9 | Moderately correlated | |
| 3 | ZNF766 | 15 | 43.0 | Highly correlated | |
| 4 | ZNF506 | 8 | 28.9 | Moderately correlated | |
| 5 | ZNF723 | 6 | 15.2 | Weakly correlated | |
| 6 | ZNF28 | 5 | 28.9 | Moderately correlated | |
| 7 | ZNF197 | 5 | 99.0 | Weakly correlated | |
| 8 | ZNF589 | 5 | 28.9 | Moderately correlated | |
| 9 | ZNF175 | 5 | 94.0 | Weakly correlated | |
| 10 | ZNF584 | 3 | 99.0 | Weakly correlated | |
| 11 | ZNF705D | 2 | 28.9 | Moderately correlated | |
| 12 | ZNF674 | 2 | 99.0 | Weakly correlated | |
| 13 | ZNF705B | 2 | 28.9 | Moderately correlated | |
| 14 | ZNF479 | 2 | 6.4 | Weakly correlated | |
| 15 | ZNF596 | 1 | 94.0 | Weakly correlated | |
| 16 | ZKSCAN5 | 1 | 160.0 | Weakly correlated | |
| 17 | ZNF136 | 1 | 74.0 | Weakly correlated | |
| 18 | ZNF141 | 1 | 43.0 | Highly correlated | |
| 19 | ZNF597 | 1 | 94.0 | Weakly correlated | |
| 20 | ZNF2 | 1 | 99.0 | Weakly correlated | |
| 21 | ZNF257 | 1 | 0.0 | Weakly correlated | |
| 22 | ZNF735 | 1 | 28.9 | Moderately correlated | |
| 23 | ZNF101 | 1 | 43.0 | Highly correlated | |
| 24 | ZNF679 | 1 | 28.9 | Moderately correlated | |
| 25 | ZNF202 | 1 | 160.0 | Weakly correlated | |
| 26 | ZNF610 | 1 | 28.9 | Moderately correlated | |
| 27 | ZNF282 | 1 | 319.0 | Weakly correlated | |
| 28 | ZNF534 | 1 | 19.6 | Weakly correlated | |
| 29 | ZNF485 | 1 | 94.0 | Weakly correlated | |
| 30 | ZNF468 | 1 | 28.9 | Moderately correlated | |
| 31 | ZIM3 | 1 | 87.0 | Weakly correlated | |
| 32 | ZNF701 | 1 | 28.9 | Moderately correlated | |
| 33 | ZNF695 | 1 | 28.9 | Moderately correlated |
KZFPs Motif in Repeats Consensus
:
| # | KZFP name | KZFP age(Mya) | Time correlation with Repeats |
|---|