ZRdb KZFP & Repeats
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LTR_LTR9B

  • Name
    LTR9B
  • Repbase
    LTR9B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000623
Description :

LTR9B is similar to LTR9 over its full length and is found flankingclosely related internal sequences (mostly HUERS-P3b). 4 bp TSDs.HUERS-P3 LTR.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgtaggagttattaagaaattattttaggcagatagagaggaaaaggggtccttgggaagttttcgtttctttttaaagcagctccagaaacgtttcttgtctagcaggaaagccccggctcttagagccgggccggcaacctttgatatgcaaatgcaggccattagaaactgggtccacccaacatggcgattcccgccgtcgtcttcttgcccttgccccacatgtgcctggcaacatggccgcccccacatatccccacgtgtgtagaacatcatggcgccctgcatttgcatattaaaaggctagggtgggagggccagttttttcgcgggctacgtgaatgacatgcctggtcaaaccaatcccctgagccctatgcaaatcagacaccgcctcctccagcctcctcatataactggctggtntccgccgcacncggggtttcctctctcggctttggagcccccctccctctgtctctgtacgggggagcttcttccttctttcttctcccttctttcttgcctattaaactctccgctccttaaaaccactccacgtgtgtccgtgtcgttttatctaantcggcgcgaggaccaagaaccctggtgttcctccactcatcggagccgtatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 36 43.0 Highly correlated
2 ZNF382 31 99.0 Weakly correlated
3 ZNF534 18 19.6 Weakly correlated
4 ZNF589 16 28.9 Moderately correlated
5 ZNF485 15 94.0 Weakly correlated
6 ZNF793 11 99.0 Weakly correlated
7 ZNF175 11 94.0 Weakly correlated
8 ZNF394 9 99.0 Weakly correlated
9 ZKSCAN8 9 160.0 Weakly correlated
10 ZNF468 8 28.9 Moderately correlated
11 ZNF705B 8 28.9 Moderately correlated
12 ZFP69B 8 99.0 Weakly correlated
13 ZNF197 8 99.0 Weakly correlated
14 ZFP37 7 99.0 Weakly correlated
15 ZNF584 7 99.0 Weakly correlated
16 ZNF257 7 0.0 Weakly correlated
17 ZNF251 6 94.0 Weakly correlated
18 ZNF317 6 99.0 Weakly correlated
19 ZFP57 5 87.0 Weakly correlated
20 ZNF479 5 6.4 Weakly correlated
21 ZNF610 5 28.9 Moderately correlated
22 ZNF669 5 43.0 Highly correlated
23 ZNF28 5 28.9 Moderately correlated
24 ZIM3 5 87.0 Weakly correlated
25 ZNF2 4 99.0 Weakly correlated
26 ZKSCAN1 4 160.0 Weakly correlated
27 ZNF101 4 43.0 Highly correlated
28 ZNF723 4 15.2 Weakly correlated
29 ZNF705D 4 28.9 Moderately correlated
30 ZNF18 4 160.0 Weakly correlated
31 ZNF701 4 28.9 Moderately correlated
32 ZNF263 4 180.0 Weakly correlated
33 ZNF320 4 28.9 Moderately correlated
34 ZNF597 3 94.0 Weakly correlated
35 ZNF695 3 28.9 Moderately correlated
36 ZNF324 3 99.0 Weakly correlated
37 ZNF141 3 43.0 Highly correlated
38 ZNF778 3 74.0 Weakly correlated
39 ZNF273 3 28.9 Moderately correlated
40 ZNF274 3 99.0 Weakly correlated
41 ZNF558 3 99.0 Weakly correlated
42 ZNF554 2 99.0 Weakly correlated
43 ZNF441 2 43.0 Highly correlated
44 ZNF182 2 99.0 Weakly correlated
45 ZNF528 2 43.0 Highly correlated
46 ZNF331 1 94.0 Weakly correlated
47 ZNF91 1 6.0 Weakly correlated
48 ZNF84 1 99.0 Weakly correlated
49 ZNF816 1 28.9 Moderately correlated
50 ZNF7 1 99.0 Weakly correlated
51 ZKSCAN5 1 160.0 Weakly correlated
52 ZNF792 1 94.0 Weakly correlated
53 ZNF782 1 99.0 Weakly correlated
54 ZNF133 1 99.0 Weakly correlated
55 ZNF140 1 99.0 Weakly correlated
56 ZNF160 1 74.0 Weakly correlated
57 ZNF17 1 69.0 Weakly correlated
58 ZNF19 1 99.0 Weakly correlated
59 ZNF700 1 28.9 Moderately correlated
60 ZNF682 1 28.9 Moderately correlated
61 ZNF680 1 28.9 Moderately correlated
62 ZNF674 1 99.0 Weakly correlated
63 ZNF334 1 99.0 Weakly correlated
64 ZNF350 1 99.0 Weakly correlated
65 ZNF354A 1 99.0 Weakly correlated
66 ZNF425 1 94.0 Weakly correlated
67 ZNF585B 1 99.0 Weakly correlated
68 ZNF429 1 28.9 Moderately correlated
69 ZNF565 1 99.0 Weakly correlated
70 ZNF560 1 43.0 Highly correlated
71 ZNF486 1 8.6 Weakly correlated
72 ZNF506 1 28.9 Moderately correlated
73 ZNF547 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF485 16 94.0 Weakly correlated
2 ZNF534 11 19.6 Weakly correlated
3 ZNF468 8 28.9 Moderately correlated
4 ZNF257 5 0.0 Weakly correlated
5 ZNF793 5 99.0 Weakly correlated
6 ZNF584 3 99.0 Weakly correlated
7 ZNF141 2 43.0 Highly correlated
8 ZNF589 2 28.9 Moderately correlated
9 ZNF479 2 6.4 Weakly correlated
10 ZNF766 2 43.0 Highly correlated
11 ZNF597 2 94.0 Weakly correlated
12 ZNF197 2 99.0 Weakly correlated
13 ZNF506 1 28.9 Moderately correlated
14 ZNF331 1 94.0 Weakly correlated
15 ZNF28 1 28.9 Moderately correlated
16 ZNF251 1 94.0 Weakly correlated
17 ZNF816 1 28.9 Moderately correlated
18 ZNF528 1 43.0 Highly correlated
19 ZNF175 1 94.0 Weakly correlated
20 ZFP37 1 99.0 Weakly correlated
21 ZNF263 1 180.0 Weakly correlated
22 ZNF674 1 99.0 Weakly correlated
23 ZFP57 1 87.0 Weakly correlated
24 ZNF334 1 99.0 Weakly correlated
25 ZNF680 1 28.9 Moderately correlated
26 ZIM3 1 87.0 Weakly correlated
27 ZNF701 1 28.9 Moderately correlated
28 ZNF695 1 28.9 Moderately correlated
29 ZNF565 1 99.0 Weakly correlated
30 ZNF101 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF468 28.9 Moderately correlated
2 ZNF485 94.0 Weakly correlated
3 ZNF534 19.6 Weakly correlated