ZRdb KZFP & Repeats
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LTR_LTR9A1

  • Name
    LTR9A1
  • Repbase
    LTR9A1
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000622
Description :

Present at orthologous sites in all simians.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacaggagntagaaagaaattatttaggcagatagtgagggcaaaagagtcctcggcagagcttcccttttaacaaaaagcagcccccaaaatcatttcttttctaacaaagagcagcctgaaaaatcgagctgcaaacatagataagcaagctggaagcttgcacgggtgaatgccggcagctgtgccaatagaaaagggctacctgggggccaggcatgttcaacatggaggctccatcttcccttttctttgtcaccacgtgtacagtaaagaaacgggcaacatggcgccggccaggcagagaacccatctgcataataaaagattagggtgggggcggccagnttnttcgcgcnctatgcaaatggcacacctagtcctaaccagtttttcgcgcnctatgcaaatgncacacctggtccgancgnnnnnncgtgccctatgcaaatggcacacctggtccaaccaatctttcgtgccctatgtaaatcagacaccgcctcctcannagctcatctataaaaccccctgcatttcaccgcggaaccggcaacccatttctccgggacccctctctctgcagcagagagctnnnctcttctctttctttcgcctattaaacttccgctcttaacctcactctttgtgtgtccgcgtcctngttttccgtggccgtgagacaacgaacctcgggtattaccccagacaacgacgccgcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF681 66 28.9 Moderately correlated
2 ZNF680 47 28.9 Moderately correlated
3 ZNF382 18 99.0 Weakly correlated
4 ZNF486 11 8.6 Weakly correlated
5 ZNF506 10 28.9 Moderately correlated
6 ZFP69B 7 99.0 Weakly correlated
7 ZNF766 7 43.0 Highly correlated
8 ZIM3 6 87.0 Weakly correlated
9 ZNF251 6 94.0 Weakly correlated
10 ZNF701 5 28.9 Moderately correlated
11 ZNF589 4 28.9 Moderately correlated
12 ZNF705B 4 28.9 Moderately correlated
13 ZNF723 4 15.2 Weakly correlated
14 ZNF584 3 99.0 Weakly correlated
15 ZNF479 3 6.4 Weakly correlated
16 ZNF705D 3 28.9 Moderately correlated
17 ZNF679 3 28.9 Moderately correlated
18 ZNF2 3 99.0 Weakly correlated
19 ZKSCAN1 3 160.0 Weakly correlated
20 ZNF175 3 94.0 Weakly correlated
21 ZNF317 2 99.0 Weakly correlated
22 ZNF641 2 99.0 Weakly correlated
23 ZNF610 2 28.9 Moderately correlated
24 ZNF778 2 74.0 Weakly correlated
25 ZKSCAN8 2 160.0 Weakly correlated
26 ZNF534 2 19.6 Weakly correlated
27 ZNF490 2 43.0 Highly correlated
28 ZNF75D 2 94.0 Weakly correlated
29 ZNF197 2 99.0 Weakly correlated
30 ZNF202 2 160.0 Weakly correlated
31 ZNF263 2 180.0 Weakly correlated
32 ZNF429 2 28.9 Moderately correlated
33 ZNF274 2 99.0 Weakly correlated
34 ZNF350 2 99.0 Weakly correlated
35 ZNF700 1 28.9 Moderately correlated
36 ZNF793 1 99.0 Weakly correlated
37 ZNF485 1 94.0 Weakly correlated
38 ZNF677 1 99.0 Weakly correlated
39 ZNF563 1 28.9 Moderately correlated
40 ZNF510 1 99.0 Weakly correlated
41 ZFP37 1 99.0 Weakly correlated
42 ZNF441 1 43.0 Highly correlated
43 ZNF41 1 99.0 Weakly correlated
44 ZNF394 1 99.0 Weakly correlated
45 ZNF18 1 160.0 Weakly correlated
46 ZNF169 1 94.0 Weakly correlated
47 ZFP69 1 99.0 Weakly correlated
48 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF681 63 28.9 Moderately correlated
2 ZNF680 7 28.9 Moderately correlated
3 ZNF506 5 28.9 Moderately correlated
4 ZNF723 4 15.2 Weakly correlated
5 ZIM3 4 87.0 Weakly correlated
6 ZNF479 3 6.4 Weakly correlated
7 ZNF589 3 28.9 Moderately correlated
8 ZNF584 2 99.0 Weakly correlated
9 ZNF485 1 94.0 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF677 1 99.0 Weakly correlated
12 ZNF641 1 99.0 Weakly correlated
13 ZNF701 1 28.9 Moderately correlated
14 ZNF175 1 94.0 Weakly correlated
15 ZNF610 1 28.9 Moderately correlated
16 ZFP57 1 87.0 Weakly correlated
17 ZNF534 1 19.6 Weakly correlated
18 ZNF197 1 99.0 Weakly correlated
19 ZNF251 1 94.0 Weakly correlated
20 ZNF705D 1 28.9 Moderately correlated
21 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats