ZRdb KZFP & Repeats
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LTR_LTR91

  • Name
    LTR91
  • Repbase
    LTR91
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000621
Description :

TG-CA ends and 5-bp TSDs indicate it is a solo LTR. No copies inopossum.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaatatgtagcacacccagacagaaataagcctcgttaagacagaattctgtaagggangctgcttacctggttttgcccactctgggcaccagaatcttgactctaatagtcaggtagggtccacctagtccaggtatctatatataacaatacctggaggggttctttaactcgggactttatgaagacgacaaaaggatttgttgagaatgactgaacccacactctgnaatgagaactatatacagtttactacatatacttacatacaataaactataaaggatatacagtgggttctgatatcagtctccagttcctcctcactaaggaactggtgataacccttaaccagtgtggctaagggaatagttctggtccagtctggatcctcttctgtgtgtcccacgttgctctcgtcccacgtcgtctgcgctgggatgtccgcttcttgcttcagggcccttattactaagtcttagtctttgcttatgcacttgctcaaagtacagtctttaagtactgagtctttatcagttgatttctacggaaggctttgcttccctccaatatgctctgcaaaatgctggctgtggctacgtaatgctgtctctctaacctgagcgtcccgcgtctgtgttctctttgctgtaatcgatgcnttctctgtgctgtggcgatgggagaggngttttaaancccctttggcgggaagagtcacttcctgcttggagtccgaactgaaaacggatcccccatttgcgcagcgccatgacacttcctgtgtaacaccattaaacatcccccaggcagcagtagctcgggacattactgtttaatcacttcatgcccaatatcgtgtgggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 23 99.0 Highly correlated
2 ZNF324 13 99.0 Highly correlated
3 ZNF766 12 43.0 Weakly correlated
4 ZNF263 10 180.0 Weakly correlated
5 ZNF394 9 99.0 Highly correlated
6 ZNF18 9 160.0 Weakly correlated
7 ZNF2 8 99.0 Highly correlated
8 ZNF175 7 94.0 Moderately correlated
9 ZNF528 7 43.0 Weakly correlated
10 ZNF610 7 28.9 Weakly correlated
11 ZKSCAN1 7 160.0 Weakly correlated
12 ZNF197 6 99.0 Highly correlated
13 ZNF589 6 28.9 Weakly correlated
14 ZNF140 5 99.0 Highly correlated
15 ZFP37 5 99.0 Highly correlated
16 ZFP69B 4 99.0 Highly correlated
17 ZNF584 4 99.0 Highly correlated
18 ZNF101 4 43.0 Weakly correlated
19 ZNF75A 3 94.0 Moderately correlated
20 ZNF778 3 74.0 Weakly correlated
21 ZKSCAN8 3 160.0 Weakly correlated
22 ZNF534 3 19.6 Weakly correlated
23 ZNF680 3 28.9 Weakly correlated
24 ZNF597 2 94.0 Moderately correlated
25 ZNF558 2 99.0 Highly correlated
26 ZNF641 2 99.0 Highly correlated
27 ZNF519 2 19.6 Weakly correlated
28 ZNF786 2 99.0 Highly correlated
29 ZNF695 1 28.9 Weakly correlated
30 ZNF701 1 28.9 Weakly correlated
31 ZNF793 1 99.0 Highly correlated
32 ZNF735 1 28.9 Weakly correlated
33 ZNF816 1 28.9 Weakly correlated
34 ZNF92 1 28.9 Weakly correlated
35 ZNF765 1 8.6 Weakly correlated
36 ZNF571 1 99.0 Highly correlated
37 ZNF554 1 99.0 Highly correlated
38 ZNF490 1 43.0 Weakly correlated
39 ZNF483 1 99.0 Highly correlated
40 ZNF425 1 94.0 Moderately correlated
41 ZNF337 1 43.0 Weakly correlated
42 ZNF317 1 99.0 Highly correlated
43 ZNF273 1 28.9 Weakly correlated
44 ZNF264 1 99.0 Highly correlated
45 ZNF251 1 94.0 Moderately correlated
46 ZNF250 1 99.0 Highly correlated
47 ZNF230 1 28.9 Weakly correlated
48 ZKSCAN5 1 160.0 Weakly correlated
49 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF528 2 43.0 Weakly correlated
2 ZNF75A 2 94.0 Moderately correlated
3 ZNF317 1 99.0 Highly correlated
4 ZNF793 1 99.0 Highly correlated
5 ZNF382 1 99.0 Highly correlated
6 ZNF597 1 94.0 Moderately correlated
7 ZNF534 1 19.6 Weakly correlated
8 ZNF264 1 99.0 Highly correlated
9 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats