ZRdb KZFP & Repeats
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LTR_LTR9

  • Name
    LTR9
  • Repbase
    LTR9
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000618
Description :

LTR9 long terminal repeats flank sequences like HUERS-P3 and HUERS-P3B.4 bp TSDs. Represents one of the youngest of many subfamilies ofLTR9-ERVs, with copies on average 13% diverged.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacaggagttaagaagaaattacttaggcagatagtgagggtacgggagtcctcggtaaggcttttctttttaatgaaaagcagccccaaatcattttctaacaaagagcagcctgtaaagtcgagctgcagacatagacaagcaagctgggagcttgcacgggtgaatgccggcaggaactagggactagacatgttcaagatggcggctccatcttcccttctctgccagccacgtgtacagtaaggagcagacaagatggcgccggccaagtggaaagcccatttgcataataagattagggtggggcgaccagccttccccgcgcgctatgtaaacgtcatacctgatcgaaccaatctgtgagccctacgtaaatcagacaccgcctcctcaagcctgactataaaatccggcgcatccgccgccggccggtcctttccnctcggaagacccctctctctanagagagagctgtttctctttctcttctcttctgcctattaaacctccgctcctaaactcctcgtgtgtgtccgtgtcctaaattttcctggcgcgagacgacgaaccccggggtatntaccccagacaacgtagccgcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 378 28.9 Moderately correlated
2 ZNF766 112 43.0 Highly correlated
3 ZNF382 66 99.0 Weakly correlated
4 ZNF589 66 28.9 Moderately correlated
5 ZNF175 58 94.0 Weakly correlated
6 ZNF197 49 99.0 Weakly correlated
7 ZNF584 42 99.0 Weakly correlated
8 ZKSCAN8 33 160.0 Weakly correlated
9 ZNF394 31 99.0 Weakly correlated
10 ZNF324 25 99.0 Weakly correlated
11 ZFP69B 24 99.0 Weakly correlated
12 ZNF610 23 28.9 Moderately correlated
13 ZNF558 21 99.0 Weakly correlated
14 ZNF2 18 99.0 Weakly correlated
15 ZFP37 16 99.0 Weakly correlated
16 ZNF18 15 160.0 Weakly correlated
17 ZNF263 14 180.0 Weakly correlated
18 ZNF506 13 28.9 Moderately correlated
19 ZNF101 12 43.0 Highly correlated
20 ZNF528 11 43.0 Highly correlated
21 ZKSCAN1 10 160.0 Weakly correlated
22 ZNF679 9 28.9 Moderately correlated
23 ZNF75A 9 94.0 Weakly correlated
24 ZFP57 8 87.0 Weakly correlated
25 ZNF28 7 28.9 Moderately correlated
26 ZNF317 7 99.0 Weakly correlated
27 ZNF547 6 74.0 Weakly correlated
28 ZNF641 6 99.0 Weakly correlated
29 ZNF534 5 19.6 Weakly correlated
30 ZNF705B 5 28.9 Moderately correlated
31 ZNF44 5 43.0 Highly correlated
32 ZNF554 4 99.0 Weakly correlated
33 ZNF816 4 28.9 Moderately correlated
34 ZNF705D 4 28.9 Moderately correlated
35 ZNF723 4 15.2 Weakly correlated
36 ZNF485 4 94.0 Weakly correlated
37 ZNF202 3 160.0 Weakly correlated
38 ZNF169 3 94.0 Weakly correlated
39 ZNF695 3 28.9 Moderately correlated
40 ZNF479 3 6.4 Weakly correlated
41 ZNF441 3 43.0 Highly correlated
42 ZIM3 3 87.0 Weakly correlated
43 ZNF778 3 74.0 Weakly correlated
44 ZNF350 3 99.0 Weakly correlated
45 ZKSCAN5 2 160.0 Weakly correlated
46 ZNF486 2 8.6 Weakly correlated
47 ZNF490 2 43.0 Highly correlated
48 ZNF519 2 19.6 Weakly correlated
49 ZNF274 2 99.0 Weakly correlated
50 ZNF75D 2 94.0 Weakly correlated
51 ZNF257 2 0.0 Weakly correlated
52 ZNF701 2 28.9 Moderately correlated
53 ZNF700 2 28.9 Moderately correlated
54 ZNF567 2 99.0 Weakly correlated
55 ZNF92 1 28.9 Moderately correlated
56 ZNF671 1 94.0 Weakly correlated
57 ZNF141 1 43.0 Highly correlated
58 ZNF8 1 99.0 Weakly correlated
59 ZNF85 1 28.9 Moderately correlated
60 ZNF140 1 99.0 Weakly correlated
61 ZNF282 1 319.0 Weakly correlated
62 ZNF284 1 43.0 Highly correlated
63 ZNF283 1 99.0 Weakly correlated
64 ZNF425 1 94.0 Weakly correlated
65 ZNF429 1 28.9 Moderately correlated
66 ZNF433 1 43.0 Highly correlated
67 ZNF440 1 28.9 Moderately correlated
68 ZFP30 1 99.0 Weakly correlated
69 ZNF483 1 99.0 Weakly correlated
70 ZNF180 1 99.0 Weakly correlated
71 ZNF26 1 99.0 Weakly correlated
72 ZNF264 1 99.0 Weakly correlated
73 ZNF561 1 43.0 Highly correlated
74 ZNF563 1 28.9 Moderately correlated
75 ZNF573 1 94.0 Weakly correlated
76 ZNF251 1 94.0 Weakly correlated
77 ZNF211 1 94.0 Weakly correlated
78 ZNF605 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 87 28.9 Moderately correlated
2 ZNF766 21 43.0 Highly correlated
3 ZNF28 6 28.9 Moderately correlated
4 ZNF197 6 99.0 Weakly correlated
5 ZNF589 5 28.9 Moderately correlated
6 ZNF584 4 99.0 Weakly correlated
7 ZNF175 4 94.0 Weakly correlated
8 ZNF485 4 94.0 Weakly correlated
9 ZFP57 3 87.0 Weakly correlated
10 ZNF723 3 15.2 Weakly correlated
11 ZFP69B 2 99.0 Weakly correlated
12 ZNF705B 2 28.9 Moderately correlated
13 ZNF324 2 99.0 Weakly correlated
14 ZIM3 2 87.0 Weakly correlated
15 ZNF169 2 94.0 Weakly correlated
16 ZNF283 1 99.0 Weakly correlated
17 ZKSCAN1 1 160.0 Weakly correlated
18 ZKSCAN5 1 160.0 Weakly correlated
19 ZNF534 1 19.6 Weakly correlated
20 ZNF382 1 99.0 Weakly correlated
21 ZNF695 1 28.9 Moderately correlated
22 ZNF141 1 43.0 Highly correlated
23 ZNF558 1 99.0 Weakly correlated
24 ZNF506 1 28.9 Moderately correlated
25 ZNF440 1 28.9 Moderately correlated
26 ZNF573 1 94.0 Weakly correlated
27 ZNF705D 1 28.9 Moderately correlated
28 ZNF441 1 43.0 Highly correlated
29 ZNF479 1 6.4 Weakly correlated
30 ZNF263 1 180.0 Weakly correlated
31 ZNF528 1 43.0 Highly correlated
32 ZNF490 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF197 99.0 Weakly correlated