ZRdb KZFP & Repeats
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LTR_LTR8B

  • Name
    LTR8B
  • Repbase
    LTR8B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000617
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgcctttgcaaagattatgacagtgagagaaatctgacatggctgactccatcttgcttctagcctcacaggctggctgtcctcgctcattcctgggcgtaggccaagctaaccntgggaggaatttagtttatagtttaactttgaagcaaggatgataatagtccctccctaaaactaaccccctccttgctcggggaccgaaaccgcctttgtaagactaatgaaaggccacaagattaggattatgggaggggcctgaattctgctaagatgtaggcatagttaaacgataaccagccattgtncccgnnncgnntttctataatcccttactgctcaggagtcatgtggccagaggtcacaagatttgtgacttccccaattgctcctatagataacatcactattgtagaacctaagattggtcttttgagatgtttttcagacttttgcattctggcgaccgactgaccccacccggacccgtgactcatgactcaaccggtcctgtggccgnnnncgnnncccacccagaggcggactcagcgcacgaggacccgttttccacacccctatgatttncatccccaaccaatcagcagcacccattccctagccccctgcccaccaaattatccntgaaaaaccctagcctccgagccttcggggagactgatttgagtaataanctccagtcctcccgcntggccggcctcgcgttaattaaactctttctctactgcaataccgcggtctcagtgaattggttttgtctgtgcagcgggcaggaagaacccgtcgggcgattaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF480 464 43.0 Highly correlated
2 ZNF766 179 43.0 Highly correlated
3 ZNF823 173 43.0 Highly correlated
4 ZNF382 147 99.0 Weakly correlated
5 ZNF44 146 43.0 Highly correlated
6 ZNF589 87 28.9 Moderately correlated
7 ZNF175 84 94.0 Weakly correlated
8 ZNF799 69 43.0 Highly correlated
9 ZFP37 61 99.0 Weakly correlated
10 ZNF394 61 99.0 Weakly correlated
11 ZNF584 59 99.0 Weakly correlated
12 ZNF197 51 99.0 Weakly correlated
13 ZNF680 45 28.9 Moderately correlated
14 ZNF442 41 43.0 Highly correlated
15 ZFP69B 36 99.0 Weakly correlated
16 ZIM3 36 87.0 Weakly correlated
17 ZNF534 35 19.6 Weakly correlated
18 ZKSCAN1 31 160.0 Weakly correlated
19 ZNF324 29 99.0 Weakly correlated
20 ZKSCAN8 28 160.0 Weakly correlated
21 ZNF554 23 99.0 Weakly correlated
22 ZNF558 23 99.0 Weakly correlated
23 ZNF2 22 99.0 Weakly correlated
24 ZNF441 21 43.0 Highly correlated
25 ZNF793 21 99.0 Weakly correlated
26 ZNF263 20 180.0 Weakly correlated
27 ZNF479 20 6.4 Weakly correlated
28 ZNF317 19 99.0 Weakly correlated
29 ZNF140 18 99.0 Weakly correlated
30 ZNF101 17 43.0 Highly correlated
31 ZNF18 17 160.0 Weakly correlated
32 ZNF735 17 28.9 Moderately correlated
33 ZNF549 16 87.0 Weakly correlated
34 ZNF679 16 28.9 Moderately correlated
35 ZNF547 15 74.0 Weakly correlated
36 ZNF701 14 28.9 Moderately correlated
37 ZNF75D 12 94.0 Weakly correlated
38 ZNF264 10 99.0 Weakly correlated
39 ZNF560 10 43.0 Highly correlated
40 ZNF506 9 28.9 Moderately correlated
41 ZFP69 8 99.0 Weakly correlated
42 ZNF257 8 0.0 Weakly correlated
43 ZNF350 8 99.0 Weakly correlated
44 ZNF320 7 28.9 Moderately correlated
45 ZNF723 7 15.2 Weakly correlated
46 ZNF251 6 94.0 Weakly correlated
47 ZNF610 6 28.9 Moderately correlated
48 ZNF519 5 19.6 Weakly correlated
49 ZNF528 5 43.0 Highly correlated
50 ZNF597 5 94.0 Weakly correlated
51 ZNF792 5 94.0 Weakly correlated
52 ZNF92 5 28.9 Moderately correlated
53 ZNF234 4 99.0 Weakly correlated
54 ZNF273 4 28.9 Moderately correlated
55 ZNF30 4 94.0 Weakly correlated
56 ZNF347 4 43.0 Highly correlated
57 ZNF486 4 8.6 Weakly correlated
58 ZNF510 4 99.0 Weakly correlated
59 ZNF695 4 28.9 Moderately correlated
60 ZNF705B 4 28.9 Moderately correlated
61 ZFP57 3 87.0 Weakly correlated
62 ZNF182 3 99.0 Weakly correlated
63 ZNF274 3 99.0 Weakly correlated
64 ZNF559 3 74.0 Weakly correlated
65 ZNF585B 3 99.0 Weakly correlated
66 ZNF669 3 43.0 Highly correlated
67 ZNF671 3 94.0 Weakly correlated
68 ZNF674 3 99.0 Weakly correlated
69 ZNF736 3 43.0 Highly correlated
70 ZNF8 3 99.0 Weakly correlated
71 ZNF28 2 28.9 Moderately correlated
72 ZNF333 2 99.0 Weakly correlated
73 ZNF33A 2 99.0 Weakly correlated
74 ZNF418 2 43.0 Highly correlated
75 ZNF41 2 99.0 Weakly correlated
76 ZNF585A 2 99.0 Weakly correlated
77 ZNF675 2 8.6 Weakly correlated
78 ZNF705D 2 28.9 Moderately correlated
79 ZNF707 2 74.0 Weakly correlated
80 ZNF75A 2 94.0 Weakly correlated
81 ZNF778 2 74.0 Weakly correlated
82 ZNF786 2 99.0 Weakly correlated
83 ZNF850 2 28.9 Moderately correlated
84 PRDM9 1 0.0 Weakly correlated
85 ZNF12 1 99.0 Weakly correlated
86 ZNF141 1 43.0 Highly correlated
87 ZNF157 1 99.0 Weakly correlated
88 ZNF160 1 74.0 Weakly correlated
89 ZNF230 1 28.9 Moderately correlated
90 ZNF248 1 99.0 Weakly correlated
91 ZNF253 1 19.6 Weakly correlated
92 ZNF284 1 43.0 Highly correlated
93 ZNF304 1 99.0 Weakly correlated
94 ZNF334 1 99.0 Weakly correlated
95 ZNF425 1 94.0 Weakly correlated
96 ZNF429 1 28.9 Moderately correlated
97 ZNF431 1 28.9 Moderately correlated
98 ZNF432 1 99.0 Weakly correlated
99 ZNF433 1 43.0 Highly correlated
100 ZNF440 1 28.9 Moderately correlated
101 ZNF468 1 28.9 Moderately correlated
102 ZNF490 1 43.0 Highly correlated
103 ZNF543 1 99.0 Weakly correlated
104 ZNF557 1 15.2 Weakly correlated
105 ZNF563 1 28.9 Moderately correlated
106 ZNF611 1 19.6 Weakly correlated
107 ZNF626 1 0.0 Weakly correlated
108 ZNF677 1 99.0 Weakly correlated
109 ZNF730 1 19.6 Weakly correlated
110 ZNF780A 1 43.0 Highly correlated
111 ZNF780B 1 74.0 Weakly correlated
112 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF480 458 43.0 Highly correlated
2 ZNF823 160 43.0 Highly correlated
3 ZNF44 139 43.0 Highly correlated
4 ZNF799 44 43.0 Highly correlated
5 ZNF534 30 19.6 Weakly correlated
6 ZNF442 25 43.0 Highly correlated
7 ZIM3 19 87.0 Weakly correlated
8 ZNF680 19 28.9 Moderately correlated
9 ZFP37 16 99.0 Weakly correlated
10 ZNF766 15 43.0 Highly correlated
11 ZNF382 11 99.0 Weakly correlated
12 ZNF197 10 99.0 Weakly correlated
13 ZNF554 10 99.0 Weakly correlated
14 ZFP69B 8 99.0 Weakly correlated
15 ZFP69 8 99.0 Weakly correlated
16 ZNF75D 7 94.0 Weakly correlated
17 ZNF584 7 99.0 Weakly correlated
18 ZNF257 7 0.0 Weakly correlated
19 ZNF263 5 180.0 Weakly correlated
20 ZNF589 5 28.9 Moderately correlated
21 ZNF175 4 94.0 Weakly correlated
22 ZNF701 4 28.9 Moderately correlated
23 ZNF735 4 28.9 Moderately correlated
24 ZNF723 4 15.2 Weakly correlated
25 ZNF479 4 6.4 Weakly correlated
26 ZNF264 3 99.0 Weakly correlated
27 ZNF324 3 99.0 Weakly correlated
28 ZNF736 3 43.0 Highly correlated
29 ZNF610 2 28.9 Moderately correlated
30 ZNF671 2 94.0 Weakly correlated
31 ZNF320 2 28.9 Moderately correlated
32 ZNF549 2 87.0 Weakly correlated
33 ZNF350 2 99.0 Weakly correlated
34 ZNF793 2 99.0 Weakly correlated
35 ZNF75A 1 94.0 Weakly correlated
36 ZNF626 1 0.0 Weakly correlated
37 PRDM9 1 0.0 Weakly correlated
38 ZNF433 1 43.0 Highly correlated
39 ZNF432 1 99.0 Weakly correlated
40 ZNF33A 1 99.0 Weakly correlated
41 ZNF251 1 94.0 Weakly correlated
42 ZKSCAN8 1 160.0 Weakly correlated
43 ZNF780B 1 74.0 Weakly correlated
44 ZNF317 1 99.0 Weakly correlated
45 ZNF510 1 99.0 Weakly correlated
46 ZNF2 1 99.0 Weakly correlated
47 ZNF528 1 43.0 Highly correlated
48 ZFP57 1 87.0 Weakly correlated
49 ZNF780A 1 43.0 Highly correlated
50 ZNF18 1 160.0 Weakly correlated
51 ZNF695 1 28.9 Moderately correlated
52 ZNF101 1 43.0 Highly correlated
53 ZNF679 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZFP69B 99.0 Weakly correlated
3 ZFP69 99.0 Weakly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF442 43.0 Highly correlated
6 ZNF480 43.0 Highly correlated
7 ZNF554 99.0 Weakly correlated
8 ZNF75D 94.0 Weakly correlated
9 ZNF799 43.0 Highly correlated
10 ZNF823 43.0 Highly correlated