ZRdb KZFP & Repeats
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LTR_LTR8A

  • Name
    LTR8A
  • Repbase
    LTR8A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000616
Description :

LTR8A is a subfamily of LTR8. Solo LTRs are flanked by 4 bp TSDs,characteristic of MER4-int group. Internal sequence HERV8-int is alsorelated to the MER4-int group. HUERS-P1 LTR.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgcctttgcaaaaattataacagtgagaaaattatgacagtgaaagagatctgatctaaccaacccccatcttgcctttaacctccaaactgcccttaatcattcctgggcttgggccaagctaactttgggaganatttagtttatagtttaaatgataatagcccttccccaaaactnaaccgcctttgtaaagctaatgaaaggccaccaggttaggaggatgagaggagcctgaattctgctaaggtgtagacataaacgattaccagccattattccggaggtcacaagatttgcaacttccccaattactcctgcagataacatcactattgtagaacctaagattggccttttgagatgtcttttcaggttttttcgcatttctgacaccgatggctccacctggacccgccaaccgctcctgtggccccacccagaagcgactcagcacgcangaggaccattttccacacccctatgattgcatccccaaccaatcagcagcaagcacccattncctagccacccccaccccctgcccgccaaactatctttgaaaaaccctagcctccgaattttcggggagactgatttgagtaataactccgtctcccacgtggcgtggccggcctcgcgtcaattaaactctttctctactgcaatgccgtggtctttgtctgtgcagcgggcaggaagaacccatcgggcggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF480 154 43.0 Highly correlated
2 ZNF823 124 43.0 Highly correlated
3 ZNF766 97 43.0 Highly correlated
4 ZNF44 62 43.0 Highly correlated
5 ZNF589 52 28.9 Moderately correlated
6 ZNF175 51 94.0 Weakly correlated
7 ZNF680 50 28.9 Moderately correlated
8 ZNF382 36 99.0 Weakly correlated
9 ZNF584 31 99.0 Weakly correlated
10 ZNF197 29 99.0 Weakly correlated
11 ZKSCAN8 22 160.0 Weakly correlated
12 ZNF394 21 99.0 Weakly correlated
13 ZFP69B 17 99.0 Weakly correlated
14 ZNF534 16 19.6 Weakly correlated
15 ZFP37 14 99.0 Weakly correlated
16 ZIM3 13 87.0 Weakly correlated
17 ZNF679 12 28.9 Moderately correlated
18 ZNF506 12 28.9 Moderately correlated
19 ZNF554 11 99.0 Weakly correlated
20 ZNF263 10 180.0 Weakly correlated
21 ZNF510 9 99.0 Weakly correlated
22 ZNF2 9 99.0 Weakly correlated
23 ZNF320 8 28.9 Moderately correlated
24 ZNF140 8 99.0 Weakly correlated
25 ZNF28 6 28.9 Moderately correlated
26 ZNF101 6 43.0 Highly correlated
27 ZNF558 6 99.0 Weakly correlated
28 ZNF317 6 99.0 Weakly correlated
29 ZNF735 6 28.9 Moderately correlated
30 ZNF486 6 8.6 Weakly correlated
31 ZNF479 6 6.4 Weakly correlated
32 ZNF18 6 160.0 Weakly correlated
33 ZNF705D 5 28.9 Moderately correlated
34 ZNF528 5 43.0 Highly correlated
35 ZKSCAN1 5 160.0 Weakly correlated
36 ZNF324 5 99.0 Weakly correlated
37 ZNF75D 4 94.0 Weakly correlated
38 ZNF597 4 94.0 Weakly correlated
39 ZNF707 4 74.0 Weakly correlated
40 ZNF701 4 28.9 Moderately correlated
41 ZNF705B 4 28.9 Moderately correlated
42 ZFP57 4 87.0 Weakly correlated
43 ZNF304 4 99.0 Weakly correlated
44 ZNF251 4 94.0 Weakly correlated
45 ZFP69 4 99.0 Weakly correlated
46 ZNF585B 3 99.0 Weakly correlated
47 ZNF441 3 43.0 Highly correlated
48 ZNF485 3 94.0 Weakly correlated
49 ZNF793 3 99.0 Weakly correlated
50 ZNF723 3 15.2 Weakly correlated
51 ZNF418 3 43.0 Highly correlated
52 ZNF182 3 99.0 Weakly correlated
53 ZNF610 2 28.9 Moderately correlated
54 ZNF133 2 99.0 Weakly correlated
55 ZNF331 2 94.0 Weakly correlated
56 ZNF350 2 99.0 Weakly correlated
57 ZNF675 2 8.6 Weakly correlated
58 ZNF274 2 99.0 Weakly correlated
59 ZNF17 1 69.0 Weakly correlated
60 ZNF254 1 43.0 Highly correlated
61 ZNF700 1 28.9 Moderately correlated
62 ZKSCAN5 1 160.0 Weakly correlated
63 ZNF730 1 19.6 Weakly correlated
64 ZNF141 1 43.0 Highly correlated
65 ZNF671 1 94.0 Weakly correlated
66 ZNF780A 1 43.0 Highly correlated
67 ZNF786 1 99.0 Weakly correlated
68 ZNF792 1 94.0 Weakly correlated
69 ZNF878 1 43.0 Highly correlated
70 ZNF879 1 99.0 Weakly correlated
71 ZNF91 1 6.0 Weakly correlated
72 ZNF92 1 28.9 Moderately correlated
73 ZNF559 1 74.0 Weakly correlated
74 ZNF468 1 28.9 Moderately correlated
75 ZNF440 1 28.9 Moderately correlated
76 ZNF433 1 43.0 Highly correlated
77 ZNF490 1 43.0 Highly correlated
78 ZNF429 1 28.9 Moderately correlated
79 ZNF425 1 94.0 Weakly correlated
80 ZNF519 1 19.6 Weakly correlated
81 ZNF547 1 74.0 Weakly correlated
82 ZNF333 1 99.0 Weakly correlated
83 ZNF682 1 28.9 Moderately correlated
84 ZNF573 1 94.0 Weakly correlated
85 ZNF287 1 99.0 Weakly correlated
86 ZNF284 1 43.0 Highly correlated
87 ZNF620 1 99.0 Weakly correlated
88 ZNF649 1 28.9 Moderately correlated
89 ZNF445 1 99.0 Weakly correlated
90 ZNF677 1 99.0 Weakly correlated
91 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF480 152 43.0 Highly correlated
2 ZNF823 114 43.0 Highly correlated
3 ZNF44 58 43.0 Highly correlated
4 ZNF680 18 28.9 Moderately correlated
5 ZNF766 10 43.0 Highly correlated
6 ZNF534 10 19.6 Weakly correlated
7 ZFP69B 8 99.0 Weakly correlated
8 ZNF197 5 99.0 Weakly correlated
9 ZFP69 4 99.0 Weakly correlated
10 ZNF735 4 28.9 Moderately correlated
11 ZIM3 4 87.0 Weakly correlated
12 ZFP37 3 99.0 Weakly correlated
13 ZNF75D 3 94.0 Weakly correlated
14 ZNF554 3 99.0 Weakly correlated
15 ZNF320 2 28.9 Moderately correlated
16 ZNF485 2 94.0 Weakly correlated
17 ZNF479 2 6.4 Weakly correlated
18 ZNF304 2 99.0 Weakly correlated
19 ZNF133 2 99.0 Weakly correlated
20 ZNF707 2 74.0 Weakly correlated
21 ZNF254 1 43.0 Highly correlated
22 ZNF317 1 99.0 Weakly correlated
23 ZNF382 1 99.0 Weakly correlated
24 ZNF705B 1 28.9 Moderately correlated
25 ZNF433 1 43.0 Highly correlated
26 ZNF589 1 28.9 Moderately correlated
27 ZKSCAN1 1 160.0 Weakly correlated
28 ZNF429 1 28.9 Moderately correlated
29 ZNF675 1 8.6 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
31 ZNF585B 1 99.0 Weakly correlated
32 ZNF2 1 99.0 Weakly correlated
33 ZNF705D 1 28.9 Moderately correlated
34 ZNF468 1 28.9 Moderately correlated
35 ZNF28 1 28.9 Moderately correlated
36 ZNF263 1 180.0 Weakly correlated
37 ZNF257 1 0.0 Weakly correlated
38 ZNF573 1 94.0 Weakly correlated
39 ZNF175 1 94.0 Weakly correlated
40 ZNF682 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF480 43.0 Highly correlated
2 ZNF823 43.0 Highly correlated