ZRdb KZFP & Repeats
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LTR_LTR89

  • Name
    LTR89
  • Repbase
    LTR89
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000615
Description :

5 bp TSDs. AATAAA signal at decent place in this orientation.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttggggaggcttaaaagggggatactcaaacggaattggggtgagctatactgggcacccagcttaaggggcagaggtctgnagtcagcggatatttcaaacccgccttggcctgtattcctcttcccttttgtttcctctggatagatgcttttgatggcaattctctgccccagtgacatcctgcattcccttttatcttagagcattttatagtctccttttgtgattggggtatagttagatagttagagctgggatccttcacctttcccctatttgatatgtaggatttatgtaattttggtattcgtcttatctattgatgctggacattggggaggacacgtatggatctaagcgatatccttggtgccaagatgtcgggagcgcccggatccatctggggacttttccaggtgctnatgggcgggtgctgtatgtcacaagatgccaagagcccacaagaagaagataagatcaccggatgagacctccgaggacaaacatctccgaattggggagcgaaggtcgcatttgcaggctcgctcctcccatctctcctgataacgcccccgctgcttattatgggatgtgggttgttatggtgatgggagggggctgaactgggaggggattgtgaaagatgttgcaatgtggaaaaggggcttaacctatataaacctttgtcaaaatttactcctttgagctgggcttgagacgtcgcattgcctgctcccatgatgccggcgggcatcatgaggtcaataaagtttcctaagattctgcgagccagactggtctctgtcttcnctacgttaccccgggaccccagggaggccacggctactgaggaggggtcccggtagcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 24 99.0 Highly correlated
2 ZNF766 15 43.0 Weakly correlated
3 ZIM3 12 87.0 Moderately correlated
4 ZNF263 12 180.0 Weakly correlated
5 ZNF680 11 28.9 Weakly correlated
6 ZFP37 8 99.0 Highly correlated
7 ZNF394 8 99.0 Highly correlated
8 ZNF558 6 99.0 Highly correlated
9 ZNF679 6 28.9 Weakly correlated
10 ZNF2 5 99.0 Highly correlated
11 ZNF479 5 6.4 Weakly correlated
12 ZNF705B 5 28.9 Weakly correlated
13 ZNF705D 5 28.9 Weakly correlated
14 ZNF197 5 99.0 Highly correlated
15 ZFP69B 5 99.0 Highly correlated
16 ZNF723 4 15.2 Weakly correlated
17 ZNF534 4 19.6 Weakly correlated
18 ZNF597 4 94.0 Moderately correlated
19 ZNF324 4 99.0 Highly correlated
20 ZNF18 3 160.0 Weakly correlated
21 ZNF701 3 28.9 Weakly correlated
22 ZNF175 3 94.0 Moderately correlated
23 ZNF133 3 99.0 Highly correlated
24 ZNF610 3 28.9 Weakly correlated
25 ZNF589 3 28.9 Weakly correlated
26 ZNF584 3 99.0 Highly correlated
27 ZNF317 3 99.0 Highly correlated
28 ZNF735 2 28.9 Weakly correlated
29 ZNF808 2 19.6 Weakly correlated
30 ZNF92 2 28.9 Weakly correlated
31 ZKSCAN8 2 160.0 Weakly correlated
32 ZNF506 2 28.9 Weakly correlated
33 ZNF101 2 43.0 Weakly correlated
34 ZNF141 2 43.0 Weakly correlated
35 ZNF28 2 28.9 Weakly correlated
36 ZNF554 2 99.0 Highly correlated
37 ZNF257 1 0.0 Weakly correlated
38 ZNF816 1 28.9 Weakly correlated
39 ZNF789 1 99.0 Highly correlated
40 ZNF75D 1 94.0 Moderately correlated
41 ZNF75A 1 94.0 Moderately correlated
42 ZNF182 1 99.0 Highly correlated
43 ZNF251 1 94.0 Moderately correlated
44 ZNF716 1 19.6 Weakly correlated
45 ZNF425 1 94.0 Moderately correlated
46 ZNF440 1 28.9 Weakly correlated
47 ZNF471 1 94.0 Moderately correlated
48 ZNF485 1 94.0 Moderately correlated
49 ZNF486 1 8.6 Weakly correlated
50 ZNF585B 1 99.0 Highly correlated
51 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Moderately correlated
2 ZNF534 3 19.6 Weakly correlated
3 ZNF141 2 43.0 Weakly correlated
4 ZNF263 2 180.0 Weakly correlated
5 ZNF479 2 6.4 Weakly correlated
6 ZNF133 1 99.0 Highly correlated
7 ZNF440 1 28.9 Weakly correlated
8 ZNF471 1 94.0 Moderately correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF701 1 28.9 Weakly correlated
11 ZNF705B 1 28.9 Weakly correlated
12 ZNF680 1 28.9 Weakly correlated
13 ZNF716 1 19.6 Weakly correlated
14 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats