ZRdb KZFP & Repeats
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LTR_LTR87

  • Name
    LTR87
  • Repbase
    LTR87
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000611
Description :

Clear 5 bp TSD (NNNNC bias). Orientation unknown; no matches to otherLTRs, no AWTAAA in either orientation.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcagcgcccaccagggggtcttcttaggttcaactaaacattcagactcacaagactaccataggccacacttggcaccagtctactcagaaggatataggacaggaaccacagcttgccagcagggcagcgtcaggcgttcctcttcngcgggagtcctcgcagcgtccatgcagcagtccacacagccgtccaggagctattctctttgccccccaggtgacagctcaggtgcgaggagacgagatccacatcgggcgggtgcgggagccgccctggcttagaagcctcatgccccacaggagccaatatctcttgtaacaactccataggcatagcttccagggtccccgcaagggacatgcccagttacaagagtcaccgcactcagggaagcccaaagctatggcntccccatcaggtatttatagttcatttatagttcctcccagtccagatgcaatttaccaatcaggggtcatttttaccataagcaatgttgcctagtaacacagttgacattccacctttatcaggtttccaggggaacagagctagaaagttaaccgaaggtcaaattctcatgcagaaggggaaagggttttgttaaccctttacccaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 29 99.0 Highly correlated
2 ZNF766 8 43.0 Weakly correlated
3 ZNF679 7 28.9 Weakly correlated
4 ZNF317 7 99.0 Highly correlated
5 ZFP37 6 99.0 Highly correlated
6 ZNF589 6 28.9 Weakly correlated
7 ZNF584 6 99.0 Highly correlated
8 ZNF18 6 160.0 Weakly correlated
9 ZNF175 6 94.0 Moderately correlated
10 ZKSCAN8 5 160.0 Weakly correlated
11 ZNF263 5 180.0 Weakly correlated
12 ZKSCAN1 5 160.0 Weakly correlated
13 ZNF197 4 99.0 Highly correlated
14 ZNF534 4 19.6 Weakly correlated
15 ZIM3 4 87.0 Moderately correlated
16 ZNF479 4 6.4 Weakly correlated
17 ZNF723 3 15.2 Weakly correlated
18 ZNF705B 3 28.9 Weakly correlated
19 ZNF2 3 99.0 Highly correlated
20 ZNF394 3 99.0 Highly correlated
21 ZNF92 2 28.9 Weakly correlated
22 ZNF705D 2 28.9 Weakly correlated
23 ZNF701 2 28.9 Weakly correlated
24 ZFP57 2 87.0 Moderately correlated
25 ZNF506 2 28.9 Weakly correlated
26 ZNF274 2 99.0 Highly correlated
27 ZNF28 1 28.9 Weakly correlated
28 ZNF101 1 43.0 Weakly correlated
29 ZNF878 1 43.0 Weakly correlated
30 ZNF808 1 19.6 Weakly correlated
31 ZNF777 1 319.0 Weakly correlated
32 ZFP30 1 99.0 Highly correlated
33 ZNF735 1 28.9 Weakly correlated
34 ZNF251 1 94.0 Moderately correlated
35 ZNF257 1 0.0 Weakly correlated
36 ZNF471 1 94.0 Moderately correlated
37 ZNF324 1 99.0 Highly correlated
38 ZFP69B 1 99.0 Highly correlated
39 ZFP69 1 99.0 Highly correlated
40 ZNF554 1 99.0 Highly correlated
41 ZNF549 1 87.0 Moderately correlated
42 ZNF331 1 94.0 Moderately correlated
43 ZNF528 1 43.0 Weakly correlated
44 ZNF334 1 99.0 Highly correlated
45 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 3 28.9 Weakly correlated
2 ZNF263 3 180.0 Weakly correlated
3 ZNF382 3 99.0 Highly correlated
4 ZFP37 2 99.0 Highly correlated
5 ZIM3 2 87.0 Moderately correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZNF506 2 28.9 Weakly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZFP57 1 87.0 Moderately correlated
10 ZKSCAN1 1 160.0 Weakly correlated
11 ZNF549 1 87.0 Moderately correlated
12 ZNF735 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats