ZRdb KZFP & Repeats
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LTR_LTR86A1

  • Name
    LTR86A1
  • Repbase
    LTR86A1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000606
Description :

5 bp TSDs, with a bias for NNNNC. Orientation based on ATTAAA siteconserved in other LTR86 consensuses.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgcggggaaatgggctttccgggacgctggaaagctggaggcagagatattgttcagggacacctgggcactgactctgctttctccccccggatgaggatgtggccttgctgacgctgagtttggttcaagaaccaggagagcccgatgtttgtaaacattcccttaaatggaagcgcatagattgttagtgtaagttcttccngaatggtgatgtaagccccgagtataaaagggcagtggcatagcaagaattgagctttccagatccggcaagaccctaccttgcgcggacagtgtcaccggcagctgcgtgcccccgttagggactctgggggccaagggaagctacgctgagatatgctgcatctgctcctgctctgtgtggccacctcgcttccgataagnttctgtatccttggctaantaaatcgggaacttaatctaaccttacagtgtgtgtgtgtgtgttggtctcttcctgccaatccatagcccacctgaaatgctgca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 9 99.0 Highly correlated
2 ZNF263 7 180.0 Weakly correlated
3 ZNF534 6 19.6 Weakly correlated
4 ZNF680 5 28.9 Weakly correlated
5 ZNF317 5 99.0 Highly correlated
6 ZNF793 3 99.0 Highly correlated
7 ZNF479 3 6.4 Weakly correlated
8 ZNF705D 2 28.9 Weakly correlated
9 ZNF679 2 28.9 Weakly correlated
10 ZNF669 2 43.0 Weakly correlated
11 ZFP57 2 87.0 Moderately correlated
12 ZNF705B 2 28.9 Weakly correlated
13 ZNF175 2 94.0 Moderately correlated
14 ZNF100 2 28.9 Weakly correlated
15 ZNF485 1 94.0 Moderately correlated
16 ZNF707 1 74.0 Weakly correlated
17 ZNF701 1 28.9 Weakly correlated
18 ZNF723 1 15.2 Weakly correlated
19 ZNF766 1 43.0 Weakly correlated
20 ZNF684 1 99.0 Highly correlated
21 ZNF85 1 28.9 Weakly correlated
22 ZNF878 1 43.0 Weakly correlated
23 ZNF597 1 94.0 Moderately correlated
24 ZNF554 1 99.0 Highly correlated
25 ZNF394 1 99.0 Highly correlated
26 ZNF350 1 99.0 Highly correlated
27 ZNF331 1 94.0 Moderately correlated
28 ZNF2 1 99.0 Highly correlated
29 ZNF273 1 28.9 Weakly correlated
30 ZNF257 1 0.0 Weakly correlated
31 ZNF251 1 94.0 Moderately correlated
32 ZNF101 1 43.0 Weakly correlated
33 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 4 19.6 Weakly correlated
2 ZNF680 3 28.9 Weakly correlated
3 ZNF479 3 6.4 Weakly correlated
4 ZNF793 2 99.0 Highly correlated
5 ZNF701 1 28.9 Weakly correlated
6 ZNF2 1 99.0 Highly correlated
7 ZNF263 1 180.0 Weakly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF317 1 99.0 Highly correlated
10 ZNF331 1 94.0 Moderately correlated
11 ZNF350 1 99.0 Highly correlated
12 ZNF684 1 99.0 Highly correlated
13 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats