ZRdb KZFP & Repeats
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LTR_LTR85C

  • Name
    LTR85C
  • Repbase
    LTR85c
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000605
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacgggaaggaagaaantgttattttaaaagctggctgcagtttgagccggttgctctaggagganggcagaattcctcttagggagagaactgctcttttgtttgggaaaacaccttaatgggccttttggttatgcaaagnnaggccccagggcctagtctggangggagaggttgagacaaagaggaagctaaattgctctgcataataaagtaacaggaattttggagttntccnctggcggcttgagagntaggagtngtggaatttnggaggaanngggagcaggggaaggcntgagaaagnaaaaggntcttagagnagagagcaggccccagannanaagacaaaggaggncngntngagaggaaattccctgnggtggagatggccgangaactttaggaacagtgatgtctgatattcaattttaagttgtttcctgttctgtgctgtaatccccctccgtntccccaaaccttcagtaaagtctgttacacacaacagccttgtgttagtggtgctttggggaatgaaggaaaggggctggtccatgcctggggcgaagcaatgngacagagagagganagcagccgcaggaggcgagatgagagcagggatcgagaattcagcgggagcaggaantcggagcgagaggtgaccaggagaacatgagcacccctgagaatcctcggaaatattggggagggcactggacttcccgcagtacgtgggatgggggctcgagccattttatttggatattaaaggaaagggtgaccccagaaggctggaggacttgggacacccaggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 32 99.0 Highly correlated
2 ZNF680 24 28.9 Weakly correlated
3 ZNF263 16 180.0 Weakly correlated
4 ZNF394 9 99.0 Highly correlated
5 ZIM3 8 87.0 Moderately correlated
6 ZNF18 8 160.0 Weakly correlated
7 ZNF766 8 43.0 Weakly correlated
8 ZKSCAN1 7 160.0 Weakly correlated
9 ZNF589 7 28.9 Weakly correlated
10 ZFP37 6 99.0 Highly correlated
11 ZNF534 6 19.6 Weakly correlated
12 ZNF175 6 94.0 Moderately correlated
13 ZNF324 5 99.0 Highly correlated
14 ZNF679 5 28.9 Weakly correlated
15 ZNF2 5 99.0 Highly correlated
16 ZKSCAN8 5 160.0 Weakly correlated
17 ZNF197 5 99.0 Highly correlated
18 ZNF75D 4 94.0 Moderately correlated
19 ZNF479 4 6.4 Weakly correlated
20 ZNF584 4 99.0 Highly correlated
21 ZNF558 4 99.0 Highly correlated
22 ZNF705D 3 28.9 Weakly correlated
23 ZNF723 3 15.2 Weakly correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF486 2 8.6 Weakly correlated
26 ZNF485 2 94.0 Moderately correlated
27 ZNF547 2 74.0 Weakly correlated
28 ZNF549 2 87.0 Moderately correlated
29 ZNF554 2 99.0 Highly correlated
30 ZNF101 2 43.0 Weakly correlated
31 ZNF641 2 99.0 Highly correlated
32 ZFP69B 2 99.0 Highly correlated
33 ZNF320 2 28.9 Weakly correlated
34 ZNF317 2 99.0 Highly correlated
35 ZNF736 2 43.0 Weakly correlated
36 ZNF793 2 99.0 Highly correlated
37 ZNF789 1 99.0 Highly correlated
38 ZNF735 1 28.9 Weakly correlated
39 ZNF701 1 28.9 Weakly correlated
40 ZNF8 1 99.0 Highly correlated
41 ZNF878 1 43.0 Weakly correlated
42 ZNF823 1 43.0 Weakly correlated
43 ZNF93 1 8.6 Weakly correlated
44 ZNF700 1 28.9 Weakly correlated
45 ZNF813 1 28.9 Weakly correlated
46 ZNF695 1 28.9 Weakly correlated
47 ZNF682 1 28.9 Weakly correlated
48 ZNF77 1 87.0 Moderately correlated
49 ZNF28 1 28.9 Weakly correlated
50 ZFP69 1 99.0 Highly correlated
51 ZNF132 1 94.0 Moderately correlated
52 ZNF140 1 99.0 Highly correlated
53 ZNF141 1 43.0 Weakly correlated
54 ZNF182 1 99.0 Highly correlated
55 ZNF224 1 69.0 Weakly correlated
56 ZNF257 1 0.0 Weakly correlated
57 ZNF264 1 99.0 Highly correlated
58 ZNF274 1 99.0 Highly correlated
59 ZNF282 1 319.0 Weakly correlated
60 ZNF677 1 99.0 Highly correlated
61 ZNF425 1 94.0 Moderately correlated
62 ZNF441 1 43.0 Weakly correlated
63 ZNF471 1 94.0 Moderately correlated
64 ZNF510 1 99.0 Highly correlated
65 ZNF528 1 43.0 Weakly correlated
66 ZNF585B 1 99.0 Highly correlated
67 ZNF597 1 94.0 Moderately correlated
68 ZNF610 1 28.9 Weakly correlated
69 ZNF675 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 7 28.9 Weakly correlated
2 ZNF263 4 180.0 Weakly correlated
3 ZIM3 3 87.0 Moderately correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF534 3 19.6 Weakly correlated
6 ZNF705D 2 28.9 Weakly correlated
7 ZNF18 2 160.0 Weakly correlated
8 ZNF793 1 99.0 Highly correlated
9 ZFP37 1 99.0 Highly correlated
10 ZNF2 1 99.0 Highly correlated
11 ZNF28 1 28.9 Weakly correlated
12 ZNF723 1 15.2 Weakly correlated
13 ZNF257 1 0.0 Weakly correlated
14 ZNF75D 1 94.0 Moderately correlated
15 ZNF677 1 99.0 Highly correlated
16 ZNF597 1 94.0 Moderately correlated
17 ZNF554 1 99.0 Highly correlated
18 ZNF471 1 94.0 Moderately correlated
19 ZNF485 1 94.0 Moderately correlated
20 ZNF736 1 43.0 Weakly correlated
21 ZNF549 1 87.0 Moderately correlated
22 ZNF382 1 99.0 Highly correlated
23 ZNF320 1 28.9 Weakly correlated
24 ZNF132 1 94.0 Moderately correlated
25 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats