ZRdb KZFP & Repeats
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LTR_LTR85B

  • Name
    LTR85B
  • Repbase
    LTR85b
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000604
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacagagaggaaaaaattgctatttaaaaccanaactgactgcagccgcttctgcctcctaagggagtggcanaattcctctccggagnagatggctctttgtttaggaaaataccttgataggccnctttgggtgtgaaaggtgaggcccccagggcatggtctggaaggagacagtgaaacaaagaganagctaaactgctctgcataanaaaatgaacagaatttngggganntggagggnnggnaggagaggggagagggagntgagagaggggagacaggggcaagcaactgagagaagtcaggagatatgggaagcctgtggagaaaggtggccagtgagaaattcccggtggcggaggtggccgaaggacttttaagaacagggatgtctaatattcaattttaagttgtttgcgttgctgtgatgtaaccccctccgtcnccccaaaccttcagtaaagtctgctacacacacaaatgccttgtgtgagtggtgttttggggaaatcaaggaaaggggctgngttccacgtctgggtcggcgcggagcagagagaagagaacagccacgggaggtgagacgcgagtgagatcgagagttcagcggaagcaggaantcggagccagaggtgaccatgagaacgtaagccccccgggaattcgcagaaatcttggggagggcattggacttcccacaggatgtgggatgggggtttgagccaattttatttaaatctcaaaggacagggtgacctcagctgacatctgggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 39 99.0 Highly correlated
2 ZNF766 24 43.0 Weakly correlated
3 ZNF589 19 28.9 Weakly correlated
4 ZNF680 19 28.9 Weakly correlated
5 ZNF263 15 180.0 Weakly correlated
6 ZNF705B 14 28.9 Weakly correlated
7 ZNF175 14 94.0 Moderately correlated
8 ZIM3 12 87.0 Moderately correlated
9 ZNF534 11 19.6 Weakly correlated
10 ZKSCAN8 11 160.0 Weakly correlated
11 ZNF75D 11 94.0 Moderately correlated
12 ZNF394 10 99.0 Highly correlated
13 ZNF317 10 99.0 Highly correlated
14 ZNF584 9 99.0 Highly correlated
15 ZNF705D 9 28.9 Weakly correlated
16 ZFP37 8 99.0 Highly correlated
17 ZKSCAN1 8 160.0 Weakly correlated
18 ZNF18 8 160.0 Weakly correlated
19 ZNF324 7 99.0 Highly correlated
20 ZNF197 7 99.0 Highly correlated
21 ZNF793 6 99.0 Highly correlated
22 ZNF101 6 43.0 Weakly correlated
23 ZFP69B 5 99.0 Highly correlated
24 ZNF479 5 6.4 Weakly correlated
25 ZNF140 4 99.0 Highly correlated
26 ZNF679 4 28.9 Weakly correlated
27 ZNF701 4 28.9 Weakly correlated
28 ZNF257 4 0.0 Weakly correlated
29 ZNF2 3 99.0 Highly correlated
30 ZNF585A 3 99.0 Highly correlated
31 ZNF282 3 319.0 Weakly correlated
32 ZNF274 3 99.0 Highly correlated
33 ZNF610 2 28.9 Weakly correlated
34 ZNF320 2 28.9 Weakly correlated
35 ZNF641 2 99.0 Highly correlated
36 ZNF723 2 15.2 Weakly correlated
37 ZNF92 2 28.9 Weakly correlated
38 ZNF28 2 28.9 Weakly correlated
39 ZNF33A 2 99.0 Highly correlated
40 ZNF792 2 94.0 Moderately correlated
41 ZNF780A 1 43.0 Weakly correlated
42 ZNF93 1 8.6 Weakly correlated
43 ZNF671 1 94.0 Moderately correlated
44 ZFP1 1 99.0 Highly correlated
45 ZNF735 1 28.9 Weakly correlated
46 ZNF823 1 43.0 Weakly correlated
47 ZNF85 1 28.9 Weakly correlated
48 ZNF765 1 8.6 Weakly correlated
49 ZNF41 1 99.0 Highly correlated
50 ZKSCAN5 1 160.0 Weakly correlated
51 ZNF133 1 99.0 Highly correlated
52 ZNF141 1 43.0 Weakly correlated
53 ZNF248 1 99.0 Highly correlated
54 ZNF251 1 94.0 Moderately correlated
55 ZNF26 1 99.0 Highly correlated
56 ZNF287 1 99.0 Highly correlated
57 ZNF337 1 43.0 Weakly correlated
58 ZNF347 1 43.0 Weakly correlated
59 ZNF597 1 94.0 Moderately correlated
60 ZNF440 1 28.9 Weakly correlated
61 ZNF485 1 94.0 Moderately correlated
62 ZNF486 1 8.6 Weakly correlated
63 ZNF528 1 43.0 Weakly correlated
64 ZNF530 1 28.9 Weakly correlated
65 ZNF554 1 99.0 Highly correlated
66 ZNF567 1 99.0 Highly correlated
67 ZNF585B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Moderately correlated
2 ZNF479 4 6.4 Weakly correlated
3 ZNF680 3 28.9 Weakly correlated
4 ZNF75D 3 94.0 Moderately correlated
5 ZNF793 3 99.0 Highly correlated
6 ZNF263 3 180.0 Weakly correlated
7 ZNF589 3 28.9 Weakly correlated
8 ZNF317 3 99.0 Highly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF584 2 99.0 Highly correlated
11 ZNF585A 2 99.0 Highly correlated
12 ZNF382 2 99.0 Highly correlated
13 ZNF324 2 99.0 Highly correlated
14 ZNF175 2 94.0 Moderately correlated
15 ZNF723 2 15.2 Weakly correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF257 2 0.0 Weakly correlated
18 ZNF705D 1 28.9 Weakly correlated
19 ZNF485 1 94.0 Moderately correlated
20 ZNF320 1 28.9 Weakly correlated
21 ZNF282 1 319.0 Weakly correlated
22 ZNF585B 1 99.0 Highly correlated
23 ZNF610 1 28.9 Weakly correlated
24 ZNF287 1 99.0 Highly correlated
25 ZNF197 1 99.0 Highly correlated
26 ZNF530 1 28.9 Weakly correlated
27 ZNF567 1 99.0 Highly correlated
28 ZNF766 1 43.0 Weakly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZNF705B 1 28.9 Weakly correlated
31 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats