ZRdb KZFP & Repeats
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LTR_LTR85A

  • Name
    LTR85A
  • Repbase
    LTR85a
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000603
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagcggggtgaaaaaaatattatcttaacagctggcaccagaattcctcttagggagggaactgtctttgtttaggaaaataccttgataagccgcttggggtggaaggtgagaccctgagggcatggnttggcaggagacaaggaaacaaaaagatagctaaactgctctgcatnagaaatgaacgggaatttgatggagagaaggagacagagaagaggagagaaggggaggccaggcaacgtggcgagagactggagcccaagttggcggaaatggccaaaggacttttaagaacagggatgtctaatattcaattttaagttgtttgcgttgctgcgatgtaaaccccctctgtctccccaaaccttcagtaaagtctgctacacacacaaatgccttgtgtgagtgtgtttgtgtgngtggaaatcaaggaaaggggctgagttccacgtctgggtcgacgcggtgcggaacagggacagcacgtacgggacggcgagatgatccataaactgaactaattcagcggaagcaggagctcagagccagaggtgaccatgagaacgtaagccccctgggaattcgcagaaatcttggggagggcnttggactttccacaggncgtggaatgggggttcgagccaatcttatctagatctcaaggggcagggagaccccagctgacatctgggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 58 99.0 Highly correlated
2 ZNF766 34 43.0 Weakly correlated
3 ZNF680 27 28.9 Weakly correlated
4 ZNF394 26 99.0 Highly correlated
5 ZNF263 26 180.0 Weakly correlated
6 ZFP37 22 99.0 Highly correlated
7 ZIM3 21 87.0 Moderately correlated
8 ZFP69B 15 99.0 Highly correlated
9 ZNF534 15 19.6 Weakly correlated
10 ZKSCAN1 15 160.0 Weakly correlated
11 ZNF589 14 28.9 Weakly correlated
12 ZNF2 14 99.0 Highly correlated
13 ZNF175 11 94.0 Moderately correlated
14 ZNF317 11 99.0 Highly correlated
15 ZNF705B 10 28.9 Weakly correlated
16 ZNF18 9 160.0 Weakly correlated
17 ZNF479 9 6.4 Weakly correlated
18 ZNF324 9 99.0 Highly correlated
19 ZNF197 8 99.0 Highly correlated
20 ZNF558 8 99.0 Highly correlated
21 ZNF101 8 43.0 Weakly correlated
22 ZNF701 8 28.9 Weakly correlated
23 ZNF610 7 28.9 Weakly correlated
24 ZNF679 7 28.9 Weakly correlated
25 ZNF257 7 0.0 Weakly correlated
26 ZNF723 6 15.2 Weakly correlated
27 ZNF584 6 99.0 Highly correlated
28 ZNF705D 5 28.9 Weakly correlated
29 ZKSCAN8 5 160.0 Weakly correlated
30 ZNF793 4 99.0 Highly correlated
31 ZNF554 4 99.0 Highly correlated
32 ZNF75D 3 94.0 Moderately correlated
33 ZNF792 2 94.0 Moderately correlated
34 ZNF320 2 28.9 Weakly correlated
35 ZNF331 2 94.0 Moderately correlated
36 ZNF582 2 99.0 Highly correlated
37 ZNF563 2 28.9 Weakly correlated
38 ZNF823 2 43.0 Weakly correlated
39 ZNF490 2 43.0 Weakly correlated
40 ZNF485 2 94.0 Moderately correlated
41 ZNF92 1 28.9 Weakly correlated
42 ZNF780A 1 43.0 Weakly correlated
43 ZNF93 1 8.6 Weakly correlated
44 ZNF735 1 28.9 Weakly correlated
45 ZNF84 1 99.0 Highly correlated
46 ZNF674 1 99.0 Highly correlated
47 ZNF75A 1 94.0 Moderately correlated
48 ZNF425 1 94.0 Moderately correlated
49 ZKSCAN5 1 160.0 Weakly correlated
50 ZNF133 1 99.0 Highly correlated
51 ZNF140 1 99.0 Highly correlated
52 ZNF251 1 94.0 Moderately correlated
53 ZNF274 1 99.0 Highly correlated
54 ZNF283 1 99.0 Highly correlated
55 ZNF28 1 28.9 Weakly correlated
56 ZNF347 1 43.0 Weakly correlated
57 ZNF597 1 94.0 Moderately correlated
58 ZNF471 1 94.0 Moderately correlated
59 ZNF486 1 8.6 Weakly correlated
60 ZNF506 1 28.9 Weakly correlated
61 ZNF528 1 43.0 Weakly correlated
62 ZNF547 1 74.0 Weakly correlated
63 ZNF549 1 87.0 Moderately correlated
64 ZNF569 1 99.0 Highly correlated
65 ZNF585A 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 6 19.6 Weakly correlated
2 ZNF680 6 28.9 Weakly correlated
3 ZNF324 4 99.0 Highly correlated
4 ZNF479 4 6.4 Weakly correlated
5 ZIM3 3 87.0 Moderately correlated
6 ZNF257 3 0.0 Weakly correlated
7 ZNF793 3 99.0 Highly correlated
8 ZNF584 2 99.0 Highly correlated
9 ZNF701 2 28.9 Weakly correlated
10 ZNF382 2 99.0 Highly correlated
11 ZNF589 2 28.9 Weakly correlated
12 ZNF197 2 99.0 Highly correlated
13 ZNF175 2 94.0 Moderately correlated
14 ZNF766 2 43.0 Weakly correlated
15 ZNF679 2 28.9 Weakly correlated
16 ZNF317 2 99.0 Highly correlated
17 ZNF18 1 160.0 Weakly correlated
18 ZNF133 1 99.0 Highly correlated
19 ZNF506 1 28.9 Weakly correlated
20 ZNF331 1 94.0 Moderately correlated
21 ZNF558 1 99.0 Highly correlated
22 ZNF75D 1 94.0 Moderately correlated
23 ZNF347 1 43.0 Weakly correlated
24 ZNF263 1 180.0 Weakly correlated
25 ZNF585A 1 99.0 Highly correlated
26 ZNF2 1 99.0 Highly correlated
27 ZNF320 1 28.9 Weakly correlated
28 ZNF723 1 15.2 Weakly correlated
29 ZNF490 1 43.0 Weakly correlated
30 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats