ZRdb KZFP & Repeats
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LTR_LTR84B

  • Name
    LTR84B
  • Repbase
    LTR84b
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000602
Description :

Classification only on 5 bp TSDs. Orientation based on AATAAA at pos622-627 which is conserved in the related LTR83.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatgggagaccctcgggaaaatcccctacatggggcctgagaccccctgacaccgccatgtaatgatttttccttctcatgggaagcagatgggattaacagactgtgactattgtctattgttcttaagcaaggtacgccaagatctntgtgccccttcccagaagataggctgcatatctgcaacgagggaggagaacatgtaacgtctgcaaatcccctgcttaaagnccctctttgtttagaaatcatgcttgcttgctttttatgtttctataaaaaaattagggagaaacttgtccctcagtgtcccaaatgaggtaaaagaaagttgtgattggatgtcaccatgggcccacaatttctgccctgaggaaagtaataaaaggggtcagaacatccccnccccctcctggaacagtcgcccggtcgtgcctgcagaggctcggctgcaggctgcgggcaacccctctgtcgtccgcccccaatcaccaagtgagccacgccagctctggggcccaggaccgttcggacagttgaagaatcccaccttcaggcagagggcnggaagcagtgcgggtaatatctggatattgcttggcattgcatttgatagggaataaagggagagtgaaaccctttgaccggtctctgtctcttggtgtcctgaaatttccatctcattgcgatcaaaagaatcaaagtacggtctngcccagagaggggaggcatccctaattttggcagaccctaaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Highly correlated
2 ZNF680 21 28.9 Weakly correlated
3 ZIM3 14 87.0 Moderately correlated
4 ZNF263 12 180.0 Weakly correlated
5 ZNF597 10 94.0 Moderately correlated
6 ZNF705B 10 28.9 Weakly correlated
7 ZNF766 9 43.0 Weakly correlated
8 ZNF705D 9 28.9 Weakly correlated
9 ZNF534 8 19.6 Weakly correlated
10 ZNF394 8 99.0 Highly correlated
11 ZKSCAN1 8 160.0 Weakly correlated
12 ZFP37 7 99.0 Highly correlated
13 ZNF18 6 160.0 Weakly correlated
14 ZNF554 6 99.0 Highly correlated
15 ZNF317 6 99.0 Highly correlated
16 ZNF701 5 28.9 Weakly correlated
17 ZNF101 5 43.0 Weakly correlated
18 ZNF2 5 99.0 Highly correlated
19 ZNF506 4 28.9 Weakly correlated
20 ZNF589 4 28.9 Weakly correlated
21 ZNF679 4 28.9 Weakly correlated
22 ZNF175 4 94.0 Moderately correlated
23 ZNF197 3 99.0 Highly correlated
24 ZNF584 2 99.0 Highly correlated
25 ZNF813 2 28.9 Weakly correlated
26 ZNF92 2 28.9 Weakly correlated
27 ZNF468 2 28.9 Weakly correlated
28 ZKSCAN8 2 160.0 Weakly correlated
29 ZNF471 2 94.0 Moderately correlated
30 ZNF274 2 99.0 Highly correlated
31 ZNF264 2 99.0 Highly correlated
32 ZNF485 2 94.0 Moderately correlated
33 ZNF182 2 99.0 Highly correlated
34 ZNF681 1 28.9 Weakly correlated
35 ZFP69B 1 99.0 Highly correlated
36 ZNF793 1 99.0 Highly correlated
37 ZNF141 1 43.0 Weakly correlated
38 ZNF75D 1 94.0 Moderately correlated
39 ZNF735 1 28.9 Weakly correlated
40 ZNF723 1 15.2 Weakly correlated
41 ZNF251 1 94.0 Moderately correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF320 1 28.9 Weakly correlated
44 ZNF324 1 99.0 Highly correlated
45 ZNF425 1 94.0 Moderately correlated
46 ZNF441 1 43.0 Weakly correlated
47 ZNF479 1 6.4 Weakly correlated
48 ZNF490 1 43.0 Weakly correlated
49 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF597 6 94.0 Moderately correlated
2 ZNF534 5 19.6 Weakly correlated
3 ZNF680 4 28.9 Weakly correlated
4 ZIM3 3 87.0 Moderately correlated
5 ZNF18 2 160.0 Weakly correlated
6 ZNF485 2 94.0 Moderately correlated
7 ZNF75D 1 94.0 Moderately correlated
8 ZNF506 1 28.9 Weakly correlated
9 ZNF263 1 180.0 Weakly correlated
10 ZNF274 1 99.0 Highly correlated
11 ZNF589 1 28.9 Weakly correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF793 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats