ZRdb KZFP & Repeats
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LTR_LTR83

  • Name
    LTR83
  • Repbase
    LTR83
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000600
Description :

Classification only on 5 bp TSDs. Orientation based on AATAAA at pos61-623 which is conserved in the related LTR84.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtccaggggacccttggacaatcctgcctcagcaggccaagggggcttcttggccatttgccatgtgacaatgcttccttcatctgngaacanatggacttgataaactgtcactaggagagcatggtacagcaaggcttaggccattccattcccangagataatttatataagttataacaagggaagggaacgaaagcatgagatgttcttcagtctttatatcttgcnctatgtcatgagaatttttgcatgcttgctactttgtaatatctctgttagagaatagaggaagcccgcctctcagtgccccaaatgagaaaggaaaagttgtaattggatgtcatcactgtcaatcatctcgggtataaaagagggaggcaggtcacctcangagggagaaagcagtgaccaggtcgtgtccacggagcttgaccgtggacgaacctctttttgtccgcccctcctaagatncgggggggggggggnggggggtcttcaanttctgctcggacttttgaaacagttcaaataaggagagaaacctcaccagcagagggctgagaaaccagtgcgggtaatatctgattattacttaatgttatcttgagtagaaaataaagggactttgttgaaaaacccttctgactgatgtctgtctcttggagttctgaacctttcactcactgccttataaaaagaacctattaattaatttggggcctggcaaggagaagggagtctcccctgatctttggccaaaaattcccctaaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 45 99.0 Highly correlated
2 ZNF394 16 99.0 Highly correlated
3 ZFP37 15 99.0 Highly correlated
4 ZNF766 12 43.0 Weakly correlated
5 ZNF101 9 43.0 Weakly correlated
6 ZNF263 7 180.0 Weakly correlated
7 ZNF554 7 99.0 Highly correlated
8 ZNF324 7 99.0 Highly correlated
9 ZNF2 7 99.0 Highly correlated
10 ZIM3 7 87.0 Moderately correlated
11 ZNF610 6 28.9 Weakly correlated
12 ZNF589 6 28.9 Weakly correlated
13 ZNF175 5 94.0 Moderately correlated
14 ZFP69B 5 99.0 Highly correlated
15 ZNF534 4 19.6 Weakly correlated
16 ZNF197 4 99.0 Highly correlated
17 ZNF680 4 28.9 Weakly correlated
18 ZNF793 4 99.0 Highly correlated
19 ZNF705B 3 28.9 Weakly correlated
20 ZNF479 3 6.4 Weakly correlated
21 ZNF468 3 28.9 Weakly correlated
22 ZNF350 3 99.0 Highly correlated
23 ZNF317 3 99.0 Highly correlated
24 ZNF584 3 99.0 Highly correlated
25 ZNF701 3 28.9 Weakly correlated
26 ZNF75A 2 94.0 Moderately correlated
27 ZNF566 2 99.0 Highly correlated
28 ZNF705D 2 28.9 Weakly correlated
29 ZNF597 2 94.0 Moderately correlated
30 ZFP57 2 87.0 Moderately correlated
31 ZNF558 2 99.0 Highly correlated
32 ZNF669 2 43.0 Weakly correlated
33 ZNF490 2 43.0 Weakly correlated
34 ZKSCAN1 2 160.0 Weakly correlated
35 ZNF28 2 28.9 Weakly correlated
36 ZNF114 2 28.9 Weakly correlated
37 ZNF133 2 99.0 Highly correlated
38 ZNF264 2 99.0 Highly correlated
39 ZNF257 2 0.0 Weakly correlated
40 ZNF18 2 160.0 Weakly correlated
41 ZNF248 1 99.0 Highly correlated
42 ZNF92 1 28.9 Weakly correlated
43 ZKSCAN8 1 160.0 Weakly correlated
44 ZNF75D 1 94.0 Moderately correlated
45 ZNF723 1 15.2 Weakly correlated
46 ZNF182 1 99.0 Highly correlated
47 ZNF225 1 74.0 Weakly correlated
48 ZNF679 1 28.9 Weakly correlated
49 ZNF528 1 43.0 Weakly correlated
50 ZNF273 1 28.9 Weakly correlated
51 ZNF585B 1 99.0 Highly correlated
52 ZNF585A 1 99.0 Highly correlated
53 ZNF30 1 94.0 Moderately correlated
54 ZNF485 1 94.0 Moderately correlated
55 ZNF557 1 15.2 Weakly correlated
56 ZNF549 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 4 19.6 Weakly correlated
2 ZNF793 4 99.0 Highly correlated
3 ZIM3 2 87.0 Moderately correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF554 2 99.0 Highly correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZNF350 1 99.0 Highly correlated
8 ZFP37 1 99.0 Highly correlated
9 ZNF257 1 0.0 Weakly correlated
10 ZNF723 1 15.2 Weakly correlated
11 ZNF701 1 28.9 Weakly correlated
12 ZNF705B 1 28.9 Weakly correlated
13 ZNF585A 1 99.0 Highly correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF225 1 74.0 Weakly correlated
16 ZNF101 1 43.0 Weakly correlated
17 ZNF669 1 43.0 Weakly correlated
18 ZNF705D 1 28.9 Weakly correlated
19 ZNF28 1 28.9 Weakly correlated
20 ZNF133 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats