ZRdb KZFP & Repeats
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LTR_LTR82B

  • Name
    LTR82B
  • Repbase
    LTR82B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000599
Description :

5 bp TSDs. Subfamilies apparent. AATAAA at pos 650 conserved in LTR82A.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatattgtctgtaatttactttaaaatacttcagtatagacagtgtgatatatgtgtgtgtaagttaactttaatctacaccctaggggcggttagttaacatttgaagtaccctaatcaggaatccacactccaggggtggttagttagcatttgaaagaccctaatcaggagtccacactccagaggcggctactacaagcgcttcaantatcnctatctnaatctgcaccagagggtttgttaattagcataagggatgttagaaataatttttcattggtgaaatgagtggtgttcaagatatgtggattggctagaaatattgtacaggcacctccgcccttgcatgaacggggtataagaatctggcgagcccagcagcctaacaccttcggagtggcgccctaggtctaggactccatttggtcctgtgtcccnccacttaacggaggattctgtcgcctgatcccgactagaaggttagctgaatcctgccgccagaatattgtcgcatctgcctcgagtgaacctttcatgcaaggtgcttgtcggagtgcctaaaaggacagagagctgggacttcaccgagcttacaagaacaggttgtatgactgtttttgtgcctgcttgctaataaatgtttgtacgtgtggcagaattcggtctgagacttgctttcattgtaacataccacctggtagcgaggttgtggggaaggagacctatagccctcacctacctctaatcgtcggaggctaccgatatctaccaaaaagaacctgacaattgtgaacggccaaattggcttaggtcagttcgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 39 99.0 Highly correlated
2 ZNF679 14 28.9 Weakly correlated
3 ZIM3 13 87.0 Moderately correlated
4 ZNF394 10 99.0 Highly correlated
5 ZNF263 8 180.0 Weakly correlated
6 ZFP37 6 99.0 Highly correlated
7 ZKSCAN1 6 160.0 Weakly correlated
8 ZNF101 6 43.0 Weakly correlated
9 ZNF766 5 43.0 Weakly correlated
10 ZNF701 5 28.9 Weakly correlated
11 ZNF2 5 99.0 Highly correlated
12 ZNF589 5 28.9 Weakly correlated
13 ZNF723 4 15.2 Weakly correlated
14 ZNF680 4 28.9 Weakly correlated
15 ZNF584 3 99.0 Highly correlated
16 ZNF479 3 6.4 Weakly correlated
17 ZNF486 3 8.6 Weakly correlated
18 ZNF528 3 43.0 Weakly correlated
19 ZNF75D 3 94.0 Moderately correlated
20 ZNF554 3 99.0 Highly correlated
21 ZNF597 3 94.0 Moderately correlated
22 ZFP57 3 87.0 Moderately correlated
23 ZNF735 3 28.9 Weakly correlated
24 ZNF317 3 99.0 Highly correlated
25 ZKSCAN8 3 160.0 Weakly correlated
26 ZNF274 3 99.0 Highly correlated
27 ZNF140 3 99.0 Highly correlated
28 ZNF175 3 94.0 Moderately correlated
29 ZNF324 2 99.0 Highly correlated
30 ZFP69B 2 99.0 Highly correlated
31 ZNF133 2 99.0 Highly correlated
32 ZNF705D 2 28.9 Weakly correlated
33 ZNF705B 2 28.9 Weakly correlated
34 ZNF141 2 43.0 Weakly correlated
35 ZNF682 2 28.9 Weakly correlated
36 ZNF251 2 94.0 Moderately correlated
37 ZNF558 2 99.0 Highly correlated
38 ZNF257 2 0.0 Weakly correlated
39 ZNF534 2 19.6 Weakly correlated
40 ZNF273 1 28.9 Weakly correlated
41 ZNF8 1 99.0 Highly correlated
42 ZNF879 1 99.0 Highly correlated
43 ZNF823 1 43.0 Weakly correlated
44 ZNF793 1 99.0 Highly correlated
45 ZNF786 1 99.0 Highly correlated
46 ZNF350 1 99.0 Highly correlated
47 ZNF468 1 28.9 Weakly correlated
48 ZNF75A 1 94.0 Moderately correlated
49 ZNF284 1 43.0 Weakly correlated
50 ZNF230 1 28.9 Weakly correlated
51 ZNF716 1 19.6 Weakly correlated
52 ZNF549 1 87.0 Moderately correlated
53 ZNF18 1 160.0 Weakly correlated
54 ZNF677 1 99.0 Highly correlated
55 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 6 87.0 Moderately correlated
2 ZNF479 3 6.4 Weakly correlated
3 ZNF701 3 28.9 Weakly correlated
4 ZNF735 3 28.9 Weakly correlated
5 ZNF101 2 43.0 Weakly correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZNF679 2 28.9 Weakly correlated
8 ZNF350 1 99.0 Highly correlated
9 ZNF197 1 99.0 Highly correlated
10 ZNF554 1 99.0 Highly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZNF18 1 160.0 Weakly correlated
13 ZNF382 1 99.0 Highly correlated
14 ZNF677 1 99.0 Highly correlated
15 ZNF534 1 19.6 Weakly correlated
16 ZNF274 1 99.0 Highly correlated
17 ZNF597 1 94.0 Moderately correlated
18 ZNF175 1 94.0 Moderately correlated
19 ZNF589 1 28.9 Weakly correlated
20 ZNF394 1 99.0 Highly correlated
21 ZNF793 1 99.0 Highly correlated
22 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated