ZRdb KZFP & Repeats
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LTR_LTR82A

  • Name
    LTR82A
  • Repbase
    LTR82A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000598
Description :

5 bp TSDs. AATAAA at pos 680 conserved in LTR82B. No matches to knownERVL class LTRs yet.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatgatgtctgtaatttactttaaaatacttcagcatagacagtgtgatattatgtatgtgttagttagtttaagctncactctaggggcagtcagttgccctaatcaggaatncacactccaggggtggtcagctagcattntatcagaaaggccacactccagaggcggctactacaagcgcttcngctatctntatctctgatcaacaccagaggctttgctaattagcatantgaatgtcagaaatgggttttcattggtgaaattagtggcttgttaattagcatgatggatgttagaaatgggctctcattggtgaaattaanggtattcaagatatgtggattggctaaaatattttagagacactccccacccttgcatgaacagggtataagaatctagcgaggcctgtagcctgtacccttagggatggcgcccgaggcttgatccctaaacggtcctgtgtccagccattggttcggaggatttctggttgcctgatgccgactataagggtaacagaatcctgcctctggaatattgtcgcgtctgcctcgagtgaacctttcatgcaaggtgtggtcggagcacctaaaaggacagagagctgggacttcatcgagcttacagaacaggttgtatgaactgttttgtgcctgcttgctaataaatgtttgtttaataaatgtctgtatgtgtggcagaatttggtctgagacttgctttcattataacctggtagcgaggttgtgggggagtagctaaccctcacccacctcaaacttcttcggcggctaccgttatctaccaaaaagaacctaagagttgtgcatgaccaaattggcttaggtcagttcgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 38 99.0 Highly correlated
2 ZIM3 25 87.0 Moderately correlated
3 ZNF766 24 43.0 Weakly correlated
4 ZNF197 16 99.0 Highly correlated
5 ZNF394 16 99.0 Highly correlated
6 ZNF589 15 28.9 Weakly correlated
7 ZFP37 15 99.0 Highly correlated
8 ZNF584 14 99.0 Highly correlated
9 ZNF317 12 99.0 Highly correlated
10 ZKSCAN8 11 160.0 Weakly correlated
11 ZNF175 11 94.0 Moderately correlated
12 ZNF2 11 99.0 Highly correlated
13 ZNF324 9 99.0 Highly correlated
14 ZNF679 8 28.9 Weakly correlated
15 ZNF263 8 180.0 Weakly correlated
16 ZNF723 7 15.2 Weakly correlated
17 ZKSCAN1 6 160.0 Weakly correlated
18 ZNF701 6 28.9 Weakly correlated
19 ZFP69B 6 99.0 Highly correlated
20 ZNF486 5 8.6 Weakly correlated
21 ZNF610 5 28.9 Weakly correlated
22 ZNF101 5 43.0 Weakly correlated
23 ZNF558 4 99.0 Highly correlated
24 ZNF479 4 6.4 Weakly correlated
25 ZNF554 4 99.0 Highly correlated
26 ZNF534 4 19.6 Weakly correlated
27 ZFP57 3 87.0 Moderately correlated
28 ZNF680 3 28.9 Weakly correlated
29 ZNF274 3 99.0 Highly correlated
30 ZNF705B 3 28.9 Weakly correlated
31 ZNF202 3 160.0 Weakly correlated
32 ZNF18 3 160.0 Weakly correlated
33 ZNF793 3 99.0 Highly correlated
34 ZNF585B 2 99.0 Highly correlated
35 ZNF695 2 28.9 Weakly correlated
36 ZNF705D 2 28.9 Weakly correlated
37 ZNF425 2 94.0 Moderately correlated
38 ZNF26 2 99.0 Highly correlated
39 ZNF528 2 43.0 Weakly correlated
40 ZNF33A 2 99.0 Highly correlated
41 ZNF677 1 99.0 Highly correlated
42 ZNF808 1 19.6 Weakly correlated
43 ZFP69 1 99.0 Highly correlated
44 ZKSCAN2 1 180.0 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF182 1 99.0 Highly correlated
47 ZNF251 1 94.0 Moderately correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF681 1 28.9 Weakly correlated
50 ZNF334 1 99.0 Highly correlated
51 ZNF675 1 8.6 Weakly correlated
52 ZNF350 1 99.0 Highly correlated
53 ZNF597 1 94.0 Moderately correlated
54 ZNF383 1 99.0 Highly correlated
55 ZNF586 1 43.0 Weakly correlated
56 ZNF41 1 99.0 Highly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZNF44 1 43.0 Weakly correlated
59 ZNF485 1 94.0 Moderately correlated
60 ZNF506 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 13 87.0 Moderately correlated
2 ZNF382 6 99.0 Highly correlated
3 ZNF723 3 15.2 Weakly correlated
4 ZNF680 2 28.9 Weakly correlated
5 ZNF589 2 28.9 Weakly correlated
6 ZNF317 2 99.0 Highly correlated
7 ZNF197 2 99.0 Highly correlated
8 ZNF2 2 99.0 Highly correlated
9 ZNF101 2 43.0 Weakly correlated
10 ZKSCAN8 1 160.0 Weakly correlated
11 ZFP57 1 87.0 Moderately correlated
12 ZNF584 1 99.0 Highly correlated
13 ZNF175 1 94.0 Moderately correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF44 1 43.0 Weakly correlated
16 ZNF679 1 28.9 Weakly correlated
17 ZFP69 1 99.0 Highly correlated
18 ZNF597 1 94.0 Moderately correlated
19 ZNF528 1 43.0 Weakly correlated
20 ZKSCAN1 1 160.0 Weakly correlated
21 ZNF429 1 28.9 Weakly correlated
22 ZNF479 1 6.4 Weakly correlated
23 ZNF202 1 160.0 Weakly correlated
24 ZNF558 1 99.0 Highly correlated
25 ZNF534 1 19.6 Weakly correlated
26 ZNF263 1 180.0 Weakly correlated
27 ZNF701 1 28.9 Weakly correlated
28 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats