ZRdb KZFP & Repeats
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LTR_LTR81C

  • Name
    LTR81C
  • Repbase
    LTR81C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000597
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacggggataatatttttgaatatctcccgatgtatnttcccttatcggtaaaccagtttctctcctgcancccatccgccattatggccccagggaagggggagggcaaatgccacctcgggaaggaggaggatatgacgtaggggaagtccctgccagacaggaagaggaagtgaaagcccaccccttctggccctagnggantgtgggaaggagaaggaggaggaggcagggcagagaggtcagacgcgagtgtccttgcttccccctctcttggggtgaacctcgagaggggggggcgcnatagaaacatccagataggtatgggggaacccgagaacatcggggctagtggcccgcttccccgggcatagcctggggaggctgcaagcctctaggagaagccccgcattcgctggcgccacgtccagcatggcgcgggagcgatagngcagcactggcagagggaggtggctagatagatgagcctgaggcagcgctcctggctccccacggcctgcgcgtggcatgcaggggatccagaagttcccacgtgccccggtgaggggacgcggaggtgctgagaggaccggtggaccggcagaggcctggggtcgggacgaagaggccgcagngtgcagggacttcgcgaccagaggcaaatggccgggaccacggacttcagcggtgggtgccagcacgatgccccaaaaggccagacgggaccagtcgcacctcagcggncaccagtccagggaccagaccagaccagccactccgcagcagagaccagcgaggatccagaggacaccgcgtggatccgaggccccttcccccngccccatgaggtcacgtaagccccccccccatacacccagatgccatcttggagaggagcagggggaggaggaggaaatctgaaagactgagcatttacccgaaagagactgagtcatccaaaagagactatttaaaccggaagagactgagataccattaattggcaagtttaagtttctccctccttttccccgctacccagcggggtgggggctcatgaggaagattagatcagttatagaaaataaagaagctacattttctttgcacatctgagtgcagtgtgagtaaatttgcgaccccgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 25 99.0 Highly correlated
2 ZNF263 13 180.0 Weakly correlated
3 ZNF680 8 28.9 Weakly correlated
4 ZNF766 8 43.0 Weakly correlated
5 ZNF534 7 19.6 Weakly correlated
6 ZIM3 7 87.0 Moderately correlated
7 ZNF479 7 6.4 Weakly correlated
8 ZNF705D 7 28.9 Weakly correlated
9 ZNF705B 6 28.9 Weakly correlated
10 ZNF320 5 28.9 Weakly correlated
11 ZNF679 4 28.9 Weakly correlated
12 ZNF175 4 94.0 Moderately correlated
13 ZNF793 4 99.0 Highly correlated
14 ZNF429 3 28.9 Weakly correlated
15 ZNF597 2 94.0 Moderately correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF589 2 28.9 Weakly correlated
18 ZNF394 2 99.0 Highly correlated
19 ZNF197 2 99.0 Highly correlated
20 ZKSCAN1 2 160.0 Weakly correlated
21 ZNF485 2 94.0 Moderately correlated
22 ZNF584 2 99.0 Highly correlated
23 ZFP57 2 87.0 Moderately correlated
24 ZNF701 1 28.9 Weakly correlated
25 ZNF91 1 6.0 Weakly correlated
26 ZFP37 1 99.0 Highly correlated
27 ZNF77 1 87.0 Moderately correlated
28 ZNF723 1 15.2 Weakly correlated
29 ZNF75D 1 94.0 Moderately correlated
30 ZNF674 1 99.0 Highly correlated
31 ZNF610 1 28.9 Weakly correlated
32 ZNF554 1 99.0 Highly correlated
33 ZNF468 1 28.9 Weakly correlated
34 ZNF324 1 99.0 Highly correlated
35 ZNF2 1 99.0 Highly correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF264 1 99.0 Highly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZKSCAN8 1 160.0 Weakly correlated
41 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 5 6.4 Weakly correlated
2 ZNF263 3 180.0 Weakly correlated
3 ZIM3 2 87.0 Moderately correlated
4 ZNF680 2 28.9 Weakly correlated
5 ZNF485 2 94.0 Moderately correlated
6 ZNF534 2 19.6 Weakly correlated
7 ZNF723 1 15.2 Weakly correlated
8 ZFP37 1 99.0 Highly correlated
9 ZNF701 1 28.9 Weakly correlated
10 ZNF382 1 99.0 Highly correlated
11 ZNF75D 1 94.0 Moderately correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF597 1 94.0 Moderately correlated
14 ZNF264 1 99.0 Highly correlated
15 ZNF705B 1 28.9 Weakly correlated
16 ZNF320 1 28.9 Weakly correlated
17 ZNF793 1 99.0 Highly correlated
18 ZKSCAN1 1 160.0 Weakly correlated
19 ZFP69B 1 99.0 Highly correlated
20 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats