ZRdb KZFP & Repeats
...

LTR_LTR81B

  • Name
    LTR81B
  • Repbase
    LTR81B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000596
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaatggggataatattttgaaanatattaatgtgcttttctctttnttgtgctttctncgtgaccttctccctagtcggcccgaggcatccatctgcctcagggaaggattaggattgttacagnaggaatgcaaagagaaagaaagagttaatattcagcttctgacattcaaaataggattttgcagcaagacaatagncttgaaagccaggctttgtcgagagagaaaggattttctaaattctttagctccctttagcatatcaagagccaagcctggaggactcagatcatagagtttcttccatagtgtagagaagatatccttcccatgacggctaggccatgaggcttgctgccctagggnagaaggggatatgacanagaggaagtgaaaagccgaagcctgccccttctggccccggnggattgtgggaagaagaaggagacagaagnagagcgaggaggtcagacgccagggtcctcgctttccttccctcggggccgaacctcggggggaggggggctttagaaacatccagataggtatgggggagcccgagancatcggggctagcggcntgcttccccgggcatngctgggggaggctgcaagcctctaggagaagccccgcacgtggccacttccaacatggcgcaggagtgatggcgcggaggtggcggcgggaggcgggnagacggatgagcctgaggcagcgctcctggntccccatggcctgngcgtggcgtgcaggggacccagaagttcccgcgtgccccggtgaggggacgcggaggtgctgagagcgccggtggaccggcagaggcctggggtcaggacgaagaggccgccgtgggcggggacttcgagaccgggggcaaatggccgggaccacggactccagcggtgggtgccagcacatcaccccaaaaggccagacgggaccagtcgcacctcagcggtcaccagtccagggagcagaccagnccagccactctgcagcagagaccagcgaggatccagaggacaccgcgtggatccgaggaccccttcctcctgccgccacgaggtcacgtaagccacnccccccatacacccagacgccatcttggagaggagcagggggagggggaggaaatctgaaagactgagcatttacctaaagagactgagtcatccaaaagagactatttaacctaaagagactgtttaaattattggatcggactaagtttaccagattggactaaaatttagttntctttctccctgctacccagcagggtgggggctcgtgaggaagatcagatcagttatagagaaataaagaagctacattttctttgcacatctgagtgtagtgtgagtaaatttgcgaccccgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Highly correlated
2 ZNF766 28 43.0 Weakly correlated
3 ZNF680 17 28.9 Weakly correlated
4 ZNF263 15 180.0 Weakly correlated
5 ZNF589 13 28.9 Weakly correlated
6 ZNF175 12 94.0 Moderately correlated
7 ZNF534 9 19.6 Weakly correlated
8 ZNF679 9 28.9 Weakly correlated
9 ZKSCAN1 9 160.0 Weakly correlated
10 ZNF317 8 99.0 Highly correlated
11 ZIM3 7 87.0 Moderately correlated
12 ZFP37 7 99.0 Highly correlated
13 ZNF479 6 6.4 Weakly correlated
14 ZNF597 6 94.0 Moderately correlated
15 ZNF394 6 99.0 Highly correlated
16 ZNF2 6 99.0 Highly correlated
17 ZNF485 5 94.0 Moderately correlated
18 ZNF793 5 99.0 Highly correlated
19 ZNF723 5 15.2 Weakly correlated
20 ZNF705D 5 28.9 Weakly correlated
21 ZNF197 5 99.0 Highly correlated
22 ZNF18 5 160.0 Weakly correlated
23 ZNF324 4 99.0 Highly correlated
24 ZNF490 4 43.0 Weakly correlated
25 ZNF584 4 99.0 Highly correlated
26 ZNF101 4 43.0 Weakly correlated
27 ZNF701 3 28.9 Weakly correlated
28 ZNF705B 3 28.9 Weakly correlated
29 ZNF75D 3 94.0 Moderately correlated
30 ZNF585B 2 99.0 Highly correlated
31 ZNF707 2 74.0 Weakly correlated
32 ZNF506 2 28.9 Weakly correlated
33 ZNF471 2 94.0 Moderately correlated
34 ZNF140 2 99.0 Highly correlated
35 ZNF169 2 94.0 Moderately correlated
36 ZNF554 2 99.0 Highly correlated
37 ZNF273 2 28.9 Weakly correlated
38 ZNF274 1 99.0 Highly correlated
39 ZNF92 1 28.9 Weakly correlated
40 ZNF823 1 43.0 Weakly correlated
41 ZNF816 1 28.9 Weakly correlated
42 ZKSCAN8 1 160.0 Weakly correlated
43 ZNF133 1 99.0 Highly correlated
44 ZNF75A 1 94.0 Moderately correlated
45 ZNF735 1 28.9 Weakly correlated
46 ZNF251 1 94.0 Moderately correlated
47 ZNF264 1 99.0 Highly correlated
48 ZNF695 1 28.9 Weakly correlated
49 ZNF28 1 28.9 Weakly correlated
50 ZNF320 1 28.9 Weakly correlated
51 ZNF675 1 8.6 Weakly correlated
52 ZNF674 1 99.0 Highly correlated
53 ZNF610 1 28.9 Weakly correlated
54 ZNF440 1 28.9 Weakly correlated
55 ZNF441 1 43.0 Weakly correlated
56 ZNF519 1 19.6 Weakly correlated
57 ZNF583 1 99.0 Highly correlated
58 ZNF558 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 7 28.9 Weakly correlated
2 ZNF534 3 19.6 Weakly correlated
3 ZNF766 3 43.0 Weakly correlated
4 ZNF479 3 6.4 Weakly correlated
5 ZNF263 3 180.0 Weakly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF485 2 94.0 Moderately correlated
8 ZNF707 1 74.0 Weakly correlated
9 ZNF2 1 99.0 Highly correlated
10 ZNF75D 1 94.0 Moderately correlated
11 ZNF471 1 94.0 Moderately correlated
12 ZNF675 1 8.6 Weakly correlated
13 ZNF585B 1 99.0 Highly correlated
14 ZNF320 1 28.9 Weakly correlated
15 ZNF264 1 99.0 Highly correlated
16 ZNF679 1 28.9 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF101 1 43.0 Weakly correlated
19 ZNF793 1 99.0 Highly correlated
20 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF680 28.9 Weakly correlated