ZRdb KZFP & Repeats
...

LTR_LTR81A

  • Name
    LTR81A
  • Repbase
    LTR81A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000594
Description :

4 bp TSDs, but so old it could be predating anything we call the ERV1class (perhaps it's a Gypsy element). Orientation only based on AATAAAat pos 1285-1290 (conserved in other 2 subs).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaatggggataatatttttgaaatatattaatgtgcttttctcttttgcatttccttgtacgtgaccttctccctttcagccagaggcatccatttgcctcggggaggattaggattgttacagcaggaatgcaaagagaaagagtcaatgttcagcttttgacntccaaaataggatttttgagtccncagcaagacaatagtcttgaaagccaggctttgtcgagagagaaaggattttctaaattcttttaagctcccattaacatatcaagagccaggcctggnggactagatcatagagttttactataactagggtagagagaactcaggatatgacgtaagggaagtccctgccanaagaggaaggggggaaagcccgccccttctggncctgggggattgtgggaaggagaaggaggnggaggtagggcaaggaggtcagatgccagggtcctcgcttctcctccccttagggccgaancccgaggngagggnggctagaaacatccggataggtatgggggaacccgagaacatcggggctagtggcccgcttccccaggcanagctgggggaggctgcaagcctctaggagaagccccacattcggctggcaccactccaacatggcgcgggagcaatagcgcagcantggcggagggaggtggctaganagatgagcctgaggcagcgctcctggctccccatggcctgngcgtggcgtgcaggggatccagaagttcccgcgtgccccggtgaggggacgcggaggtgctgagagggccggtggaccggcagaggcctggggtcgggacgaagaggccgcagagtgcggggacttcgngaccagaggcaaatggctgggaccacggactccagcagtgggtgccagcacgacgccccaaaaggccagatgggaccagccgcacctcagcggncaccagtccagggancagaccagaccagccactccgcagcagagaccagcgaggatccagaggacaccgcgcggatccgaggccccttccccctncccaccacgaggtcacgtaagcccccccccatacacccagacgccatcttggggaggagcagggggagggggaggaaatctgaaagactgagcatttacccgaaagagactgagttanccaaaagagactatttaaaccgaagagactgagatactgttaattggcaagttttaaaattccctccttctccccactncccagcagggtgggggctcgtgagaaagattagatcagttatagaaaataaagaagctacattttctttgcacatctgagtgtantgtgagtaaatttgcaaccccgctaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 30 99.0 Highly correlated
2 ZNF766 18 43.0 Weakly correlated
3 ZNF263 17 180.0 Weakly correlated
4 ZNF589 13 28.9 Weakly correlated
5 ZNF175 12 94.0 Moderately correlated
6 ZNF394 10 99.0 Highly correlated
7 ZNF680 9 28.9 Weakly correlated
8 ZNF584 9 99.0 Highly correlated
9 ZNF317 9 99.0 Highly correlated
10 ZKSCAN8 8 160.0 Weakly correlated
11 ZNF705B 6 28.9 Weakly correlated
12 ZNF705D 6 28.9 Weakly correlated
13 ZIM3 6 87.0 Moderately correlated
14 ZNF554 6 99.0 Highly correlated
15 ZNF534 6 19.6 Weakly correlated
16 ZNF324 5 99.0 Highly correlated
17 ZFP37 5 99.0 Highly correlated
18 ZNF18 5 160.0 Weakly correlated
19 ZKSCAN1 5 160.0 Weakly correlated
20 ZNF197 4 99.0 Highly correlated
21 ZNF274 4 99.0 Highly correlated
22 ZNF679 4 28.9 Weakly correlated
23 ZNF479 4 6.4 Weakly correlated
24 ZNF597 4 94.0 Moderately correlated
25 ZNF41 4 99.0 Highly correlated
26 ZNF2 3 99.0 Highly correlated
27 ZNF610 3 28.9 Weakly correlated
28 ZNF793 3 99.0 Highly correlated
29 ZNF101 3 43.0 Weakly correlated
30 ZFP69B 3 99.0 Highly correlated
31 ZNF92 2 28.9 Weakly correlated
32 ZNF549 2 87.0 Moderately correlated
33 ZNF8 2 99.0 Highly correlated
34 ZNF823 2 43.0 Weakly correlated
35 ZNF558 2 99.0 Highly correlated
36 ZNF723 2 15.2 Weakly correlated
37 ZNF701 2 28.9 Weakly correlated
38 ZNF257 2 0.0 Weakly correlated
39 ZNF251 2 94.0 Moderately correlated
40 ZNF133 2 99.0 Highly correlated
41 ZNF320 2 28.9 Weakly correlated
42 ZNF136 1 74.0 Weakly correlated
43 ZNF264 1 99.0 Highly correlated
44 ZNF716 1 19.6 Weakly correlated
45 ZNF182 1 99.0 Highly correlated
46 ZNF730 1 19.6 Weakly correlated
47 ZNF75D 1 94.0 Moderately correlated
48 ZNF684 1 99.0 Highly correlated
49 ZNF777 1 319.0 Weakly correlated
50 ZNF780A 1 43.0 Weakly correlated
51 ZNF792 1 94.0 Moderately correlated
52 ZFP69 1 99.0 Highly correlated
53 ZNF878 1 43.0 Weakly correlated
54 ZFP57 1 87.0 Moderately correlated
55 ZFP28 1 99.0 Highly correlated
56 ZNF585B 1 99.0 Highly correlated
57 ZNF519 1 19.6 Weakly correlated
58 ZNF528 1 43.0 Weakly correlated
59 ZNF485 1 94.0 Moderately correlated
60 ZNF425 1 94.0 Moderately correlated
61 ZNF350 1 99.0 Highly correlated
62 ZNF34 1 99.0 Highly correlated
63 ZNF561 1 43.0 Weakly correlated
64 ZNF343 1 74.0 Weakly correlated
65 ZNF695 1 28.9 Weakly correlated
66 ZNF33A 1 99.0 Highly correlated
67 ZNF596 1 94.0 Moderately correlated
68 ZNF30 1 94.0 Moderately correlated
69 ZNF677 1 99.0 Highly correlated
70 ZNF28 1 28.9 Weakly correlated
71 ZNF26 1 99.0 Highly correlated
72 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 4 19.6 Weakly correlated
2 ZNF680 3 28.9 Weakly correlated
3 ZNF101 2 43.0 Weakly correlated
4 ZNF175 2 94.0 Moderately correlated
5 ZNF589 2 28.9 Weakly correlated
6 ZNF584 2 99.0 Highly correlated
7 ZNF793 2 99.0 Highly correlated
8 ZNF705D 2 28.9 Weakly correlated
9 ZNF263 1 180.0 Weakly correlated
10 ZNF485 1 94.0 Moderately correlated
11 ZNF823 1 43.0 Weakly correlated
12 ZNF716 1 19.6 Weakly correlated
13 ZNF705B 1 28.9 Weakly correlated
14 ZNF723 1 15.2 Weakly correlated
15 ZNF382 1 99.0 Highly correlated
16 ZNF479 1 6.4 Weakly correlated
17 ZNF264 1 99.0 Highly correlated
18 ZFP37 1 99.0 Highly correlated
19 ZNF701 1 28.9 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF610 1 28.9 Weakly correlated
22 ZNF554 1 99.0 Highly correlated
23 ZNF41 1 99.0 Highly correlated
24 ZNF324 1 99.0 Highly correlated
25 ZNF18 1 160.0 Weakly correlated
26 ZNF695 1 28.9 Weakly correlated
27 ZNF197 1 99.0 Highly correlated
28 ZNF136 1 74.0 Weakly correlated
29 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats