ZRdb KZFP & Repeats
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LTR_LTR8

  • Name
    LTR8
  • Repbase
    LTR8
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000590
Description :

5 bp TSDs
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgcctttgcaaaattataactgagacagtgaaagagatctgacctaaccgactccatcttgcttctaacctccaagctgtccttgttcattcctgggcgtaggccgaactaactttgggaggaacttagtttatagtttanantttaaacaaagacgataacagccctttcccaaaacaaacccccttcttgcctggggactagactgcctttgtaggactaacattagccacaagattagaaattatggtttaggagtcatgcagctggaggctacaagattctgaccctccccaaactgctcctaagatcagtgcttgagatattttgcagaccctgcacttgatggatcagctggcaccacccagatcgataaactggctcatctgatcttgtggcccccacccaggaactgactcagcgcaagaagacagcttcgactccctatgatttcatctctgaccaatcagcactcccgactcactggcttccccctacccaccaaattatccttaaaaactctgatccccgaatgctcggggagactgatttgagtaataataaaactccggtctcccgcacagccggctctgcgtgaattactctttctctattgcaattcccctgtcttgataaatcggctctgtctaggcagcgggcaaggtgaacccgttgggcggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 378 43.0 Highly correlated
2 ZNF823 346 43.0 Highly correlated
3 ZNF175 295 94.0 Weakly correlated
4 ZNF589 238 28.9 Moderately correlated
5 ZNF382 221 99.0 Weakly correlated
6 ZNF584 175 99.0 Weakly correlated
7 ZNF197 147 99.0 Weakly correlated
8 ZNF394 129 99.0 Weakly correlated
9 ZKSCAN8 128 160.0 Weakly correlated
10 ZNF680 110 28.9 Moderately correlated
11 ZNF701 99 28.9 Moderately correlated
12 ZNF480 92 43.0 Highly correlated
13 ZFP37 91 99.0 Weakly correlated
14 ZFP69B 70 99.0 Weakly correlated
15 ZNF554 70 99.0 Weakly correlated
16 ZNF2 64 99.0 Weakly correlated
17 ZNF324 60 99.0 Weakly correlated
18 ZNF479 60 6.4 Weakly correlated
19 ZNF263 58 180.0 Weakly correlated
20 ZNF101 52 43.0 Highly correlated
21 ZNF506 52 28.9 Moderately correlated
22 ZNF18 45 160.0 Weakly correlated
23 ZNF735 41 28.9 Moderately correlated
24 ZNF792 41 94.0 Weakly correlated
25 ZKSCAN1 39 160.0 Weakly correlated
26 ZNF350 39 99.0 Weakly correlated
27 ZNF610 38 28.9 Moderately correlated
28 ZNF547 37 74.0 Weakly correlated
29 ZNF320 36 28.9 Moderately correlated
30 ZNF486 36 8.6 Weakly correlated
31 ZNF140 35 99.0 Weakly correlated
32 ZNF558 35 99.0 Weakly correlated
33 ZNF641 34 99.0 Weakly correlated
34 ZNF264 33 99.0 Weakly correlated
35 ZNF528 29 43.0 Highly correlated
36 ZNF534 29 19.6 Weakly correlated
37 ZNF317 27 99.0 Weakly correlated
38 ZNF585B 27 99.0 Weakly correlated
39 ZNF202 26 160.0 Weakly correlated
40 ZNF8 26 99.0 Weakly correlated
41 ZNF679 25 28.9 Moderately correlated
42 ZNF597 24 94.0 Weakly correlated
43 ZNF707 24 74.0 Weakly correlated
44 ZNF354C 23 99.0 Weakly correlated
45 ZNF44 22 43.0 Highly correlated
46 ZIM3 21 87.0 Weakly correlated
47 ZNF468 18 28.9 Moderately correlated
48 ZNF845 17 28.9 Moderately correlated
49 ZNF189 16 99.0 Weakly correlated
50 ZNF705B 15 28.9 Moderately correlated
51 ZNF234 14 99.0 Weakly correlated
52 ZNF793 14 99.0 Weakly correlated
53 ZNF347 13 43.0 Highly correlated
54 ZNF441 13 43.0 Highly correlated
55 ZNF688 13 160.0 Weakly correlated
56 ZFP57 12 87.0 Weakly correlated
57 ZNF251 12 94.0 Weakly correlated
58 ZNF253 12 19.6 Weakly correlated
59 ZNF514 12 94.0 Weakly correlated
60 ZNF544 12 0.0 Weakly correlated
61 ZNF658 12 99.0 Weakly correlated
62 ZNF723 12 15.2 Weakly correlated
63 ZNF274 11 99.0 Weakly correlated
64 ZNF549 11 87.0 Weakly correlated
65 ZNF878 11 43.0 Highly correlated
66 ZNF233 10 99.0 Weakly correlated
67 ZNF568 10 99.0 Weakly correlated
68 ZNF573 10 94.0 Weakly correlated
69 ZNF695 10 28.9 Moderately correlated
70 ZNF700 10 28.9 Moderately correlated
71 ZNF718 10 19.6 Weakly correlated
72 ZNF799 10 43.0 Highly correlated
73 ZNF677 9 99.0 Weakly correlated
74 ZNF726 9 28.9 Moderately correlated
75 ZNF747 9 43.0 Highly correlated
76 ZNF763 9 15.2 Weakly correlated
77 ZNF808 9 19.6 Weakly correlated
78 ZNF813 9 28.9 Moderately correlated
79 ZNF195 8 28.9 Moderately correlated
80 ZNF286A 8 160.0 Weakly correlated
81 ZNF420 8 94.0 Weakly correlated
82 ZNF445 8 99.0 Weakly correlated
83 ZNF500 8 160.0 Weakly correlated
84 ZNF546 8 99.0 Weakly correlated
85 ZNF559 8 74.0 Weakly correlated
86 ZNF578 8 15.2 Weakly correlated
87 ZNF582 8 99.0 Weakly correlated
88 ZNF583 8 99.0 Weakly correlated
89 ZNF607 8 43.0 Highly correlated
90 ZNF699 8 99.0 Weakly correlated
91 ZNF814 8 0.0 Weakly correlated
92 ZKSCAN4 7 99.0 Weakly correlated
93 ZNF114 7 28.9 Moderately correlated
94 ZNF169 7 94.0 Weakly correlated
95 ZNF177 7 94.0 Weakly correlated
96 ZNF215 7 99.0 Weakly correlated
97 ZNF284 7 43.0 Highly correlated
98 ZNF287 7 99.0 Weakly correlated
99 ZNF337 7 43.0 Highly correlated
100 ZNF432 7 99.0 Weakly correlated
101 ZNF471 7 94.0 Weakly correlated
102 ZNF519 7 19.6 Weakly correlated
103 ZNF556 7 94.0 Weakly correlated
104 ZNF561 7 43.0 Highly correlated
105 ZNF682 7 28.9 Moderately correlated
106 ZNF705D 7 28.9 Moderately correlated
107 ZNF705E 7 0.0 Weakly correlated
108 ZNF850 7 28.9 Moderately correlated
109 ZFP30 6 99.0 Weakly correlated
110 ZFP69 6 99.0 Weakly correlated
111 ZKSCAN5 6 160.0 Weakly correlated
112 ZNF100 6 28.9 Moderately correlated
113 ZNF17 6 69.0 Weakly correlated
114 ZNF230 6 28.9 Moderately correlated
115 ZNF257 6 0.0 Weakly correlated
116 ZNF273 6 28.9 Moderately correlated
117 ZNF33A 6 99.0 Weakly correlated
118 ZNF3 6 160.0 Weakly correlated
119 ZNF416 6 43.0 Highly correlated
120 ZNF418 6 43.0 Highly correlated
121 ZNF431 6 28.9 Moderately correlated
122 ZNF454 6 99.0 Weakly correlated
123 ZNF461 6 99.0 Weakly correlated
124 ZNF473 6 43.0 Highly correlated
125 ZNF484 6 99.0 Weakly correlated
126 ZNF551 6 94.0 Weakly correlated
127 ZNF557 6 15.2 Weakly correlated
128 ZNF669 6 43.0 Highly correlated
129 ZNF66 6 0.0 Weakly correlated
130 ZNF684 6 99.0 Weakly correlated
131 ZNF689 6 99.0 Weakly correlated
132 ZNF729 6 8.6 Weakly correlated
133 ZNF74 6 99.0 Weakly correlated
134 ZNF761 6 19.6 Weakly correlated
135 ZNF777 6 319.0 Weakly correlated
136 ZNF791 6 87.0 Weakly correlated
137 ZNF92 6 28.9 Moderately correlated
138 ZKSCAN2 5 180.0 Weakly correlated
139 ZNF25 5 99.0 Weakly correlated
140 ZNF30 5 94.0 Weakly correlated
141 ZNF429 5 28.9 Moderately correlated
142 ZNF442 5 43.0 Highly correlated
143 ZNF45 5 99.0 Weakly correlated
144 ZNF543 5 99.0 Weakly correlated
145 ZNF728 5 19.6 Weakly correlated
146 ZNF254 4 43.0 Highly correlated
147 ZNF26 4 99.0 Weakly correlated
148 ZNF331 4 94.0 Weakly correlated
149 ZNF440 4 28.9 Moderately correlated
150 ZNF483 4 99.0 Weakly correlated
151 ZNF485 4 94.0 Weakly correlated
152 ZNF671 4 94.0 Weakly correlated
153 ZNF778 4 74.0 Weakly correlated
154 ZNF182 3 99.0 Weakly correlated
155 ZNF419 3 28.9 Moderately correlated
156 ZNF490 3 43.0 Highly correlated
157 ZNF605 3 99.0 Weakly correlated
158 ZNF141 2 43.0 Highly correlated
159 ZNF28 2 28.9 Moderately correlated
160 ZNF43 2 43.0 Highly correlated
161 ZNF563 2 28.9 Moderately correlated
162 ZNF681 2 28.9 Moderately correlated
163 ZNF75A 2 94.0 Weakly correlated
164 ZNF75D 2 94.0 Weakly correlated
165 ZNF91 2 6.0 Weakly correlated
166 ZFP28 1 99.0 Weakly correlated
167 ZNF133 1 99.0 Weakly correlated
168 ZNF224 1 69.0 Weakly correlated
169 ZNF248 1 99.0 Weakly correlated
170 ZNF304 1 99.0 Weakly correlated
171 ZNF333 1 99.0 Weakly correlated
172 ZNF354A 1 99.0 Weakly correlated
173 ZNF383 1 99.0 Weakly correlated
174 ZNF614 1 99.0 Weakly correlated
175 ZNF616 1 43.0 Highly correlated
176 ZNF674 1 99.0 Weakly correlated
177 ZNF730 1 19.6 Weakly correlated
178 ZNF780A 1 43.0 Highly correlated
179 ZNF786 1 99.0 Weakly correlated
180 ZNF789 1 99.0 Weakly correlated
181 ZNF84 1 99.0 Weakly correlated
182 ZNF85 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF823 334 43.0 Highly correlated
2 ZNF480 88 43.0 Highly correlated
3 ZNF766 56 43.0 Highly correlated
4 ZNF680 31 28.9 Moderately correlated
5 ZNF479 30 6.4 Weakly correlated
6 ZNF554 25 99.0 Weakly correlated
7 ZNF44 21 43.0 Highly correlated
8 ZNF735 19 28.9 Moderately correlated
9 ZNF534 16 19.6 Weakly correlated
10 ZFP37 10 99.0 Weakly correlated
11 ZNF189 8 99.0 Weakly correlated
12 ZNF677 8 99.0 Weakly correlated
13 ZNF197 7 99.0 Weakly correlated
14 ZNF589 6 28.9 Moderately correlated
15 ZNF584 6 99.0 Weakly correlated
16 ZNF175 5 94.0 Weakly correlated
17 ZNF799 5 43.0 Highly correlated
18 ZNF263 5 180.0 Weakly correlated
19 ZFP69 5 99.0 Weakly correlated
20 ZFP69B 4 99.0 Weakly correlated
21 ZNF317 4 99.0 Weakly correlated
22 ZNF320 4 28.9 Moderately correlated
23 ZNF723 4 15.2 Weakly correlated
24 ZNF793 4 99.0 Weakly correlated
25 ZIM3 4 87.0 Weakly correlated
26 ZNF101 4 43.0 Highly correlated
27 ZNF429 3 28.9 Moderately correlated
28 ZNF701 3 28.9 Moderately correlated
29 ZNF442 3 43.0 Highly correlated
30 ZNF485 2 94.0 Weakly correlated
31 ZNF440 2 28.9 Moderately correlated
32 ZNF202 2 160.0 Weakly correlated
33 ZNF382 2 99.0 Weakly correlated
34 ZKSCAN1 2 160.0 Weakly correlated
35 ZNF597 2 94.0 Weakly correlated
36 ZNF2 2 99.0 Weakly correlated
37 ZNF18 2 160.0 Weakly correlated
38 ZNF707 2 74.0 Weakly correlated
39 ZNF75D 2 94.0 Weakly correlated
40 ZNF671 2 94.0 Weakly correlated
41 ZNF605 1 99.0 Weakly correlated
42 ZNF674 1 99.0 Weakly correlated
43 ZKSCAN8 1 160.0 Weakly correlated
44 ZNF705B 1 28.9 Moderately correlated
45 ZNF92 1 28.9 Moderately correlated
46 ZNF468 1 28.9 Moderately correlated
47 ZNF350 1 99.0 Weakly correlated
48 ZNF140 1 99.0 Weakly correlated
49 ZNF792 1 94.0 Weakly correlated
50 ZNF273 1 28.9 Moderately correlated
51 ZNF383 1 99.0 Weakly correlated
52 ZNF585B 1 99.0 Weakly correlated
53 ZNF679 1 28.9 Moderately correlated
54 ZNF28 1 28.9 Moderately correlated
55 ZNF324 1 99.0 Weakly correlated
56 ZNF490 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF479 6.4 Weakly correlated
4 ZNF480 43.0 Highly correlated
5 ZNF554 99.0 Weakly correlated
6 ZNF584 99.0 Weakly correlated
7 ZNF589 28.9 Moderately correlated
8 ZNF680 28.9 Moderately correlated
9 ZNF823 43.0 Highly correlated