ZRdb KZFP & Repeats
...

LTR_LTR7C

  • Name
    LTR7C
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000588
Description :

LTR of an HERVH element active 25-40 MYA. At least 3 distinctsubfamilies in this set, but each with very few copies.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcaggcctctgagccgaagctcagccattgtaacccctgtgacctgcacatatacgtccagatggcctgcaggagccaagaagtctggagcagccgaaaaaccacaaaagaagtgaaacagccagttcctgccttaactgattaaccaaccttacgacattccaccattgtgacttgtccctgccctaccccaactgatcaatcgaccttgtgacattcttcttctggacaatgagtcttatgatctccccaccatgcaccttgtgaccccctcctctgctgacaatagataaccacctttnactgtaactttccactgcctacccaagtcctataaagcngcccctcccctatctcccttcgctgactctcttttcggactcagcccacttgcacccaagtgaataaacagccttgttgctcacacaaagcctgtttggtggtctcttcacacggacgcgcttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF700 97 28.9 Highly correlated
2 ZNF766 45 43.0 Weakly correlated
3 ZNF175 33 94.0 Weakly correlated
4 ZNF197 32 99.0 Weakly correlated
5 ZNF589 27 28.9 Highly correlated
6 ZKSCAN8 24 160.0 Weakly correlated
7 ZNF18 15 160.0 Weakly correlated
8 ZNF680 15 28.9 Highly correlated
9 ZNF584 15 99.0 Weakly correlated
10 ZNF324 15 99.0 Weakly correlated
11 ZNF8 13 99.0 Weakly correlated
12 ZKSCAN1 13 160.0 Weakly correlated
13 ZFP69B 11 99.0 Weakly correlated
14 ZNF2 9 99.0 Weakly correlated
15 ZNF382 8 99.0 Weakly correlated
16 ZNF707 6 74.0 Weakly correlated
17 ZNF585B 6 99.0 Weakly correlated
18 ZIM3 4 87.0 Weakly correlated
19 ZNF705B 4 28.9 Highly correlated
20 ZNF610 4 28.9 Highly correlated
21 ZNF394 3 99.0 Weakly correlated
22 ZNF679 3 28.9 Highly correlated
23 ZNF263 2 180.0 Weakly correlated
24 ZFP37 2 99.0 Weakly correlated
25 ZNF701 2 28.9 Highly correlated
26 ZNF274 2 99.0 Weakly correlated
27 ZNF320 2 28.9 Highly correlated
28 ZNF250 1 99.0 Weakly correlated
29 ZNF282 1 319.0 Weakly correlated
30 ZNF735 1 28.9 Highly correlated
31 ZNF723 1 15.2 Moderately correlated
32 ZNF705D 1 28.9 Highly correlated
33 ZNF264 1 99.0 Weakly correlated
34 ZNF418 1 43.0 Weakly correlated
35 ZNF101 1 43.0 Weakly correlated
36 ZNF682 1 28.9 Highly correlated
37 ZNF506 1 28.9 Highly correlated
38 ZNF429 1 28.9 Highly correlated
39 ZNF486 1 8.6 Weakly correlated
40 ZNF597 1 94.0 Weakly correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF490 1 43.0 Weakly correlated
43 ZNF273 1 28.9 Highly correlated
44 ZNF558 1 99.0 Weakly correlated
45 ZNF550 1 94.0 Weakly correlated
46 ZNF528 1 43.0 Weakly correlated
47 ZNF519 1 19.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 5 99.0 Weakly correlated
2 ZNF766 2 43.0 Weakly correlated
3 ZNF18 2 160.0 Weakly correlated
4 ZNF320 2 28.9 Highly correlated
5 ZFP37 1 99.0 Weakly correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF700 1 28.9 Highly correlated
8 ZNF550 1 94.0 Weakly correlated
9 ZNF682 1 28.9 Highly correlated
10 ZNF735 1 28.9 Highly correlated
11 ZNF257 1 0.0 Weakly correlated
12 ZNF418 1 43.0 Weakly correlated
13 ZNF264 1 99.0 Weakly correlated
14 ZNF324 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats