ZRdb KZFP & Repeats
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LTR_LTR7B

  • Name
    LTR7B
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000587
Description :

LTR of an HERVH element active 15 to 40 MYA. About half the copiespredate our speciation from Old World monkeys, about 10% is unique tothe great ape genomes. A 1 bp sequence starting around pos 180 appearswith 1 or 2 copies. The version with 1 copy was named LTR7B1 in thereference.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcaggcctctgagcccaagctaagccatcatatcccctgtgacctgcacgtatacatccagatggcctgaagcaactgaagatccacaaaagaagtgaaaatagccttaactgatgacattccaccattgtgatttgtttctgccccaccctaactgatcaatgtactttgtaatctcccccacccttaagaaggttctttgtaatctcccccacccttaagaaggttctttgtaattctccccacccttgagaatgtactttgtgagatccaccccctgcccgcaaaacattgctcctaactccaccgcctatcccaaaacctataagaactaatgataatcccaccaccctttgctgactctcttttcggactcagcccgcctgcacccaggtgaaataaacagccttgttgctcacacaaagcctgtttggtggtctcttcacacggacgcgtgagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF808 149 19.6 Moderately correlated
2 ZNF735 125 28.9 Highly correlated
3 ZNF700 20 28.9 Highly correlated
4 ZNF394 12 99.0 Weakly correlated
5 ZNF382 11 99.0 Weakly correlated
6 ZNF2 8 99.0 Weakly correlated
7 ZNF766 8 43.0 Weakly correlated
8 ZNF317 7 99.0 Weakly correlated
9 ZFP37 6 99.0 Weakly correlated
10 ZNF534 6 19.6 Moderately correlated
11 ZNF486 5 8.6 Weakly correlated
12 ZNF445 5 99.0 Weakly correlated
13 ZKSCAN8 5 160.0 Weakly correlated
14 ZNF589 5 28.9 Highly correlated
15 ZNF441 4 43.0 Weakly correlated
16 ZNF723 4 15.2 Moderately correlated
17 ZNF611 4 19.6 Moderately correlated
18 ZNF263 4 180.0 Weakly correlated
19 ZFP69B 3 99.0 Weakly correlated
20 ZNF28 3 28.9 Highly correlated
21 ZNF610 3 28.9 Highly correlated
22 ZNF91 3 6.0 Weakly correlated
23 ZNF101 3 43.0 Weakly correlated
24 ZNF175 3 94.0 Weakly correlated
25 ZNF251 3 94.0 Weakly correlated
26 ZNF707 3 74.0 Weakly correlated
27 ZNF324 2 99.0 Weakly correlated
28 ZNF705D 2 28.9 Highly correlated
29 ZNF425 2 94.0 Weakly correlated
30 ZNF528 2 43.0 Weakly correlated
31 ZNF682 2 28.9 Highly correlated
32 ZNF792 1 94.0 Weakly correlated
33 ZNF92 1 28.9 Highly correlated
34 ZNF679 1 28.9 Highly correlated
35 ZNF684 1 99.0 Weakly correlated
36 ZNF695 1 28.9 Highly correlated
37 ZNF84 1 99.0 Weakly correlated
38 ZNF701 1 28.9 Highly correlated
39 ZNF705B 1 28.9 Highly correlated
40 ZNF799 1 43.0 Weakly correlated
41 ZNF793 1 99.0 Weakly correlated
42 ZNF334 1 99.0 Weakly correlated
43 ZIK1 1 87.0 Weakly correlated
44 ZKSCAN1 1 160.0 Weakly correlated
45 ZNF100 1 28.9 Highly correlated
46 ZNF141 1 43.0 Weakly correlated
47 ZNF17 1 69.0 Weakly correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF18 1 160.0 Weakly correlated
50 ZNF197 1 99.0 Weakly correlated
51 ZNF202 1 160.0 Weakly correlated
52 ZNF641 1 99.0 Weakly correlated
53 ZNF430 1 19.6 Moderately correlated
54 ZNF471 1 94.0 Weakly correlated
55 ZNF479 1 6.4 Weakly correlated
56 ZNF506 1 28.9 Highly correlated
57 ZNF554 1 99.0 Weakly correlated
58 ZNF558 1 99.0 Weakly correlated
59 ZNF564 1 74.0 Weakly correlated
60 ZNF568 1 99.0 Weakly correlated
61 ZNF584 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF735 106 28.9 Highly correlated
2 ZNF611 4 19.6 Moderately correlated
3 ZNF534 2 19.6 Moderately correlated
4 ZNF564 1 74.0 Weakly correlated
5 ZNF471 1 94.0 Weakly correlated
6 ZNF701 1 28.9 Highly correlated
7 ZNF684 1 99.0 Weakly correlated
8 ZNF317 1 99.0 Weakly correlated
9 ZNF723 1 15.2 Moderately correlated
10 ZNF324 1 99.0 Weakly correlated
11 ZNF506 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats