ZRdb KZFP & Repeats
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LTR_LTR79

  • Name
    LTR79
  • Repbase
    LTR79
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000585
Description :

5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaggggggaacgcttnttccccactcctgatgtttccttccatgtggagggacctccattagcgtaacactcctggcctctctccgccccctcactcatcctccccaggggaggaggagtgacttatctgattggtgagtttgggagaaggaactgggcatgcgtagctcagccccttcctccctctctctttgggaccgacctgcctgcagagagcacgcgttctgctctgctcctccatgccgtaagttttacaggggcaggctctgcccctgcaggggaggcctgcggttgtccagcgctgcctgtgactgggtgggtaagtctgtctaattctggggttcagtattaggaagcccattgttgccgcanacctaagccacgttctccaacccagcctttatcagtaataaaggtgatattttgatctccatctgcctgactcctttgtctatttctcaattggttcagaactcgggcgggaaagaggggtgctatttattgggccccctcaaaccccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 105 99.0 Highly correlated
2 ZNF263 85 180.0 Weakly correlated
3 ZNF766 43 43.0 Weakly correlated
4 ZNF680 34 28.9 Weakly correlated
5 ZNF394 26 99.0 Highly correlated
6 ZFP37 22 99.0 Highly correlated
7 ZIM3 21 87.0 Moderately correlated
8 ZNF534 20 19.6 Weakly correlated
9 ZKSCAN1 20 160.0 Weakly correlated
10 ZNF589 20 28.9 Weakly correlated
11 ZNF479 18 6.4 Weakly correlated
12 ZNF705B 18 28.9 Weakly correlated
13 ZNF723 18 15.2 Weakly correlated
14 ZNF175 15 94.0 Moderately correlated
15 ZNF2 14 99.0 Highly correlated
16 ZNF679 14 28.9 Weakly correlated
17 ZNF18 13 160.0 Weakly correlated
18 ZNF558 12 99.0 Highly correlated
19 ZNF317 12 99.0 Highly correlated
20 ZNF75D 11 94.0 Moderately correlated
21 ZNF197 10 99.0 Highly correlated
22 ZKSCAN8 10 160.0 Weakly correlated
23 ZNF101 10 43.0 Weakly correlated
24 ZNF584 10 99.0 Highly correlated
25 ZNF597 10 94.0 Moderately correlated
26 ZNF257 10 0.0 Weakly correlated
27 ZNF705D 9 28.9 Weakly correlated
28 ZNF528 9 43.0 Weakly correlated
29 ZNF140 8 99.0 Highly correlated
30 ZNF701 7 28.9 Weakly correlated
31 ZNF92 7 28.9 Weakly correlated
32 ZNF610 6 28.9 Weakly correlated
33 ZNF324 6 99.0 Highly correlated
34 ZNF793 6 99.0 Highly correlated
35 ZNF554 6 99.0 Highly correlated
36 ZFP69B 6 99.0 Highly correlated
37 ZNF251 5 94.0 Moderately correlated
38 ZNF274 5 99.0 Highly correlated
39 ZNF519 4 19.6 Weakly correlated
40 ZNF141 4 43.0 Weakly correlated
41 ZNF436 3 180.0 Weakly correlated
42 ZNF93 3 8.6 Weakly correlated
43 ZNF780A 3 43.0 Weakly correlated
44 ZNF778 3 74.0 Weakly correlated
45 ZNF735 3 28.9 Weakly correlated
46 ZNF331 3 94.0 Moderately correlated
47 ZNF563 3 28.9 Weakly correlated
48 ZNF549 3 87.0 Moderately correlated
49 ZNF485 3 94.0 Moderately correlated
50 ZNF506 3 28.9 Weakly correlated
51 ZNF264 2 99.0 Highly correlated
52 ZNF674 2 99.0 Highly correlated
53 ZNF320 2 28.9 Weakly correlated
54 ZNF28 2 28.9 Weakly correlated
55 ZNF850 2 28.9 Weakly correlated
56 ZNF585A 2 99.0 Highly correlated
57 ZNF347 2 43.0 Weakly correlated
58 ZNF561 2 43.0 Weakly correlated
59 ZFP28 2 99.0 Highly correlated
60 ZNF273 2 28.9 Weakly correlated
61 ZNF486 2 8.6 Weakly correlated
62 ZNF772 1 94.0 Moderately correlated
63 ZNF184 1 99.0 Highly correlated
64 ZNF777 1 319.0 Weakly correlated
65 ZNF816 1 28.9 Weakly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF786 1 99.0 Highly correlated
68 ZNF468 1 28.9 Weakly correlated
69 ZNF813 1 28.9 Weakly correlated
70 ZNF287 1 99.0 Highly correlated
71 ZNF81 1 99.0 Highly correlated
72 ZNF823 1 43.0 Weakly correlated
73 ZNF85 1 28.9 Weakly correlated
74 ZNF879 1 99.0 Highly correlated
75 ZNF8 1 99.0 Highly correlated
76 ZNF91 1 6.0 Weakly correlated
77 ZNF12 1 99.0 Highly correlated
78 ZNF433 1 43.0 Weakly correlated
79 ZNF667 1 99.0 Highly correlated
80 ZNF425 1 94.0 Moderately correlated
81 ZNF41 1 99.0 Highly correlated
82 ZNF547 1 74.0 Weakly correlated
83 ZNF510 1 99.0 Highly correlated
84 ZNF354A 1 99.0 Highly correlated
85 ZNF350 1 99.0 Highly correlated
86 ZNF334 1 99.0 Highly correlated
87 ZNF490 1 43.0 Weakly correlated
88 ZNF641 1 99.0 Highly correlated
89 ZNF75A 1 94.0 Moderately correlated
90 ZNF677 1 99.0 Highly correlated
91 ZNF30 1 94.0 Moderately correlated
92 ZNF304 1 99.0 Highly correlated
93 ZNF681 1 28.9 Weakly correlated
94 ZNF682 1 28.9 Weakly correlated
95 ZNF695 1 28.9 Weakly correlated
96 ZNF284 1 43.0 Weakly correlated
97 ZNF727 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 30 180.0 Weakly correlated
2 ZNF534 11 19.6 Weakly correlated
3 ZNF723 7 15.2 Weakly correlated
4 ZNF479 6 6.4 Weakly correlated
5 ZNF680 5 28.9 Weakly correlated
6 ZNF75D 4 94.0 Moderately correlated
7 ZIM3 3 87.0 Moderately correlated
8 ZNF141 3 43.0 Weakly correlated
9 ZNF257 3 0.0 Weakly correlated
10 ZNF528 2 43.0 Weakly correlated
11 ZNF331 2 94.0 Moderately correlated
12 ZNF506 2 28.9 Weakly correlated
13 ZNF766 2 43.0 Weakly correlated
14 ZNF585A 2 99.0 Highly correlated
15 ZNF347 2 43.0 Weakly correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF382 2 99.0 Highly correlated
18 ZFP28 1 99.0 Highly correlated
19 ZNF823 1 43.0 Weakly correlated
20 ZFP37 1 99.0 Highly correlated
21 ZFP69B 1 99.0 Highly correlated
22 ZNF701 1 28.9 Weakly correlated
23 ZNF101 1 43.0 Weakly correlated
24 ZNF597 1 94.0 Moderately correlated
25 ZNF549 1 87.0 Moderately correlated
26 ZNF433 1 43.0 Weakly correlated
27 ZNF317 1 99.0 Highly correlated
28 ZNF251 1 94.0 Moderately correlated
29 ZNF140 1 99.0 Highly correlated
30 ZNF705B 1 28.9 Weakly correlated
31 ZNF610 1 28.9 Weakly correlated
32 ZNF485 1 94.0 Moderately correlated
33 ZNF41 1 99.0 Highly correlated
34 ZNF679 1 28.9 Weakly correlated
35 ZNF75A 1 94.0 Moderately correlated
36 ZNF394 1 99.0 Highly correlated
37 ZNF264 1 99.0 Highly correlated
38 ZNF879 1 99.0 Highly correlated
39 ZNF558 1 99.0 Highly correlated
40 ZNF677 1 99.0 Highly correlated
41 ZNF429 1 28.9 Weakly correlated
42 ZNF561 1 43.0 Weakly correlated
43 ZNF850 1 28.9 Weakly correlated
44 ZNF793 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated