ZRdb KZFP & Repeats
...

LTR_LTR78

  • Name
    LTR78
  • Repbase
    LTR78
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000583
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacaggatgttaaantggaagtttcggctgaggcaccaagatacaatagataccanattccaaagtgaggtgccagaccacnatgcagantttcaaaggaggtggccgaaaaccggttnnacgactcttaaacccctcacccacatcgagggtataaaagggtcgggangttggagatgaggggagatttgtgaagaggatttctttggagagagctgttggtgtgctgtgagtcccaccccacccccaaggagagaggagggggggtgctcccccttcacctcaagccnagngagaggggcttcaacgggaccactcggagagcttgatatgtgtcccctgcagtttgggggacacagtggactggtgtctgactcncgcctgggaaatctaaagggcgagagacgggctggccagctgctctgacggcggagcaaaggagaggtggctgcgctgggatcggcctgcactcccagagtttgtcggggcaaaggatgcgtgagtgtttcccgtggaccagatgtgggccacgcgngagagagagccggcgtggggtcgtcttaggtcctgtccaagagggccgcctggaggggcgaagggacctcagcagagagaagctggaggtaccgccggattcccaggggctgaggaaggagtaagcgaccagccggaagagagatgcattcgcccgcgtcaagggaactgcaggtgagagatccccagcgatggggggggggatctccgaagaacccacgaaagcgcccacgagagaaagagtcagctttaaacacctgccaggcccagagagcgcgaagccagctcacagacagtaccagtcaagtaagaactttcctgctccccttncctctcctccctccccncgctccaaccctggaggggtcagaaaccgcggttagcaagtgggggaggaggagnagggaaagagaaaaaagaagccaccacacccccttccccggctgcaggcttccngcctgcagcaggcccgagctgggggaggggagaagctttaactttaaatcaagttcggagttttgattattacatgggactggacattttaattactgaattgagactgtgttttgtgacttaaagtgaccgtaggactttttattacctaagagtgaccagaaaagtcatgggacctgcccgagttttcatccaggggcaggggaagaactanccccactgaataaatttaaagggacagtgggagacaaaaataaagttgctttntgattacatcccatgagtcntgcttgttcaacgtaccggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 164 99.0 Highly correlated
2 ZNF263 106 180.0 Weakly correlated
3 ZNF766 73 43.0 Weakly correlated
4 ZNF680 70 28.9 Weakly correlated
5 ZNF394 51 99.0 Highly correlated
6 ZNF534 45 19.6 Weakly correlated
7 ZFP37 41 99.0 Highly correlated
8 ZNF479 37 6.4 Weakly correlated
9 ZNF589 34 28.9 Weakly correlated
10 ZNF2 33 99.0 Highly correlated
11 ZIM3 32 87.0 Moderately correlated
12 ZNF257 32 0.0 Weakly correlated
13 ZNF75D 31 94.0 Moderately correlated
14 ZNF317 29 99.0 Highly correlated
15 ZNF705B 26 28.9 Weakly correlated
16 ZFP69B 25 99.0 Highly correlated
17 ZNF679 25 28.9 Weakly correlated
18 ZKSCAN1 22 160.0 Weakly correlated
19 ZNF175 22 94.0 Moderately correlated
20 ZNF18 18 160.0 Weakly correlated
21 ZNF320 18 28.9 Weakly correlated
22 ZNF554 18 99.0 Highly correlated
23 ZNF584 18 99.0 Highly correlated
24 ZNF705D 16 28.9 Weakly correlated
25 ZNF197 15 99.0 Highly correlated
26 ZNF723 15 15.2 Weakly correlated
27 ZKSCAN8 14 160.0 Weakly correlated
28 ZNF701 14 28.9 Weakly correlated
29 ZNF597 13 94.0 Moderately correlated
30 ZNF793 12 99.0 Highly correlated
31 ZNF324 10 99.0 Highly correlated
32 ZNF101 9 43.0 Weakly correlated
33 ZNF558 9 99.0 Highly correlated
34 ZFP57 7 87.0 Moderately correlated
35 ZNF251 7 94.0 Moderately correlated
36 ZNF28 7 28.9 Weakly correlated
37 ZNF549 7 87.0 Moderately correlated
38 ZNF486 6 8.6 Weakly correlated
39 ZNF519 6 19.6 Weakly correlated
40 ZNF528 6 43.0 Weakly correlated
41 ZNF674 6 99.0 Highly correlated
42 ZNF141 5 43.0 Weakly correlated
43 ZNF274 5 99.0 Highly correlated
44 ZNF485 5 94.0 Moderately correlated
45 ZNF610 5 28.9 Weakly correlated
46 ZNF778 5 74.0 Weakly correlated
47 ZNF92 5 28.9 Weakly correlated
48 ZNF133 4 99.0 Highly correlated
49 ZNF273 4 28.9 Weakly correlated
50 ZNF282 4 319.0 Weakly correlated
51 ZNF334 4 99.0 Highly correlated
52 ZNF33A 4 99.0 Highly correlated
53 ZNF425 4 94.0 Moderately correlated
54 ZNF506 4 28.9 Weakly correlated
55 ZNF585B 4 99.0 Highly correlated
56 ZNF490 3 43.0 Weakly correlated
57 ZNF585A 3 99.0 Highly correlated
58 ZFP28 2 99.0 Highly correlated
59 ZKSCAN5 2 160.0 Weakly correlated
60 ZNF169 2 94.0 Moderately correlated
61 ZNF189 2 99.0 Highly correlated
62 ZNF230 2 28.9 Weakly correlated
63 ZNF26 2 99.0 Highly correlated
64 ZNF337 2 43.0 Weakly correlated
65 ZNF343 2 74.0 Weakly correlated
66 ZNF41 2 99.0 Highly correlated
67 ZNF436 2 180.0 Weakly correlated
68 ZNF441 2 43.0 Weakly correlated
69 ZNF44 2 43.0 Weakly correlated
70 ZNF471 2 94.0 Moderately correlated
71 ZNF510 2 99.0 Highly correlated
72 ZNF567 2 99.0 Highly correlated
73 ZNF667 2 99.0 Highly correlated
74 ZNF677 2 99.0 Highly correlated
75 ZNF735 2 28.9 Weakly correlated
76 ZNF761 2 19.6 Weakly correlated
77 ZNF765 2 8.6 Weakly correlated
78 ZNF780B 2 74.0 Weakly correlated
79 ZNF786 2 99.0 Highly correlated
80 ZNF792 2 94.0 Moderately correlated
81 ZNF816 2 28.9 Weakly correlated
82 ZNF823 2 43.0 Weakly correlated
83 ZNF846 2 74.0 Weakly correlated
84 ZNF85 2 28.9 Weakly correlated
85 ZNF93 2 8.6 Weakly correlated
86 ZFP14 1 99.0 Highly correlated
87 ZFP30 1 99.0 Highly correlated
88 ZNF140 1 99.0 Highly correlated
89 ZNF160 1 74.0 Weakly correlated
90 ZNF17 1 69.0 Weakly correlated
91 ZNF182 1 99.0 Highly correlated
92 ZNF250 1 99.0 Highly correlated
93 ZNF267 1 43.0 Weakly correlated
94 ZNF284 1 43.0 Weakly correlated
95 ZNF333 1 99.0 Highly correlated
96 ZNF33B 1 99.0 Highly correlated
97 ZNF347 1 43.0 Weakly correlated
98 ZNF350 1 99.0 Highly correlated
99 ZNF37A 1 99.0 Highly correlated
100 ZNF429 1 28.9 Weakly correlated
101 ZNF433 1 43.0 Weakly correlated
102 ZNF43 1 43.0 Weakly correlated
103 ZNF442 1 43.0 Weakly correlated
104 ZNF470 1 99.0 Highly correlated
105 ZNF483 1 99.0 Highly correlated
106 ZNF484 1 99.0 Highly correlated
107 ZNF530 1 28.9 Weakly correlated
108 ZNF547 1 74.0 Weakly correlated
109 ZNF563 1 28.9 Weakly correlated
110 ZNF578 1 15.2 Weakly correlated
111 ZNF587 1 28.9 Weakly correlated
112 ZNF616 1 43.0 Weakly correlated
113 ZNF682 1 28.9 Weakly correlated
114 ZNF700 1 28.9 Weakly correlated
115 ZNF707 1 74.0 Weakly correlated
116 ZNF808 1 19.6 Weakly correlated
117 ZNF81 1 99.0 Highly correlated
118 ZNF850 1 28.9 Weakly correlated
119 ZNF878 1 43.0 Weakly correlated
120 ZNF8 1 99.0 Highly correlated
121 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 32 180.0 Weakly correlated
2 ZNF534 27 19.6 Weakly correlated
3 ZNF680 21 28.9 Weakly correlated
4 ZNF479 19 6.4 Weakly correlated
5 ZNF257 14 0.0 Weakly correlated
6 ZNF75D 13 94.0 Moderately correlated
7 ZIM3 10 87.0 Moderately correlated
8 ZNF766 9 43.0 Weakly correlated
9 ZNF554 7 99.0 Highly correlated
10 ZNF723 6 15.2 Weakly correlated
11 ZFP37 5 99.0 Highly correlated
12 ZNF382 4 99.0 Highly correlated
13 ZNF679 4 28.9 Weakly correlated
14 ZNF793 4 99.0 Highly correlated
15 ZNF589 3 28.9 Weakly correlated
16 ZFP69B 3 99.0 Highly correlated
17 ZNF320 3 28.9 Weakly correlated
18 ZNF141 3 43.0 Weakly correlated
19 ZNF2 3 99.0 Highly correlated
20 ZNF175 3 94.0 Moderately correlated
21 ZNF597 3 94.0 Moderately correlated
22 ZNF485 3 94.0 Moderately correlated
23 ZNF197 2 99.0 Highly correlated
24 ZNF816 2 28.9 Weakly correlated
25 ZKSCAN5 2 160.0 Weakly correlated
26 ZNF101 2 43.0 Weakly correlated
27 ZNF585A 2 99.0 Highly correlated
28 ZNF705B 2 28.9 Weakly correlated
29 ZNF343 2 74.0 Weakly correlated
30 ZNF674 2 99.0 Highly correlated
31 ZNF549 2 87.0 Moderately correlated
32 ZNF701 2 28.9 Weakly correlated
33 ZNF705D 2 28.9 Weakly correlated
34 ZNF506 1 28.9 Weakly correlated
35 ZFP57 1 87.0 Moderately correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF528 1 43.0 Weakly correlated
38 ZNF707 1 74.0 Weakly correlated
39 ZNF91 1 6.0 Weakly correlated
40 ZNF273 1 28.9 Weakly correlated
41 ZNF667 1 99.0 Highly correlated
42 ZFP14 1 99.0 Highly correlated
43 ZNF44 1 43.0 Weakly correlated
44 ZNF282 1 319.0 Weakly correlated
45 ZNF530 1 28.9 Weakly correlated
46 ZNF169 1 94.0 Moderately correlated
47 ZNF350 1 99.0 Highly correlated
48 ZNF584 1 99.0 Highly correlated
49 ZNF585B 1 99.0 Highly correlated
50 ZNF610 1 28.9 Weakly correlated
51 ZNF324 1 99.0 Highly correlated
52 ZNF41 1 99.0 Highly correlated
53 ZNF429 1 28.9 Weakly correlated
54 ZNF486 1 8.6 Weakly correlated
55 ZNF133 1 99.0 Highly correlated
56 ZNF735 1 28.9 Weakly correlated
57 ZNF37A 1 99.0 Highly correlated
58 ZNF436 1 180.0 Weakly correlated
59 ZNF780B 1 74.0 Weakly correlated
60 ZNF189 1 99.0 Highly correlated
61 ZNF317 1 99.0 Highly correlated
62 ZNF347 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF680 28.9 Weakly correlated
4 ZNF75D 94.0 Moderately correlated
5 ZNF766 43.0 Weakly correlated