ZRdb KZFP & Repeats
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LTR_LTR77

  • Name
    LTR77
  • Repbase
    LTR77
  • Type
    LTR
  • Emergence
    94.0 Mya
  • Dfam Id
    DF0000582
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagagaggaggcagttagaggctggttaggcagatagagagggagggtctcgggagaggaacaatgnncgcgngaacacccgcgggaccgcacctgcaccgcccctgtagctagcgggaagaaatgtggttaagaacttcctcttatgccaggatgtttgctcagaagggactgtcccaacttaggcgcaggcgcaataaatcaacctaaatgtccttaacttgacccagctcattatatcattaacatgacattagcattgtggttttagcccccgtgggtttcgcttaggcactcatgggtaataaccaagatggagtcactntggccaaccccaggcatgcgcagatgcaacacccctaggagggaactttacccctcccatttgggcagaacccacagaagacttccttgcttctgccacataaaagacgcgcccagaactcagccccatttctggcaacccgctttcgggtcccctctcnttgctgagagctttccttttgcttaataaatcctactctgccttactcactctccggtgtccgcgtgccttattcttcttggtcgtgggacaagaactcggacctagctgaactaaggantaagnagactgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 295 28.9 Weakly correlated
2 ZNF486 29 8.6 Weakly correlated
3 ZNF766 11 43.0 Weakly correlated
4 ZNF175 8 94.0 Highly correlated
5 ZNF597 7 94.0 Highly correlated
6 ZNF589 7 28.9 Weakly correlated
7 ZNF197 6 99.0 Weakly correlated
8 ZKSCAN8 5 160.0 Weakly correlated
9 ZNF584 5 99.0 Weakly correlated
10 ZNF705B 3 28.9 Weakly correlated
11 ZNF506 3 28.9 Weakly correlated
12 ZKSCAN1 2 160.0 Weakly correlated
13 ZNF679 2 28.9 Weakly correlated
14 ZNF479 2 6.4 Weakly correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF723 1 15.2 Weakly correlated
18 ZNF705D 1 28.9 Weakly correlated
19 ZNF780A 1 43.0 Weakly correlated
20 ZNF793 1 99.0 Weakly correlated
21 ZFP69B 1 99.0 Weakly correlated
22 ZNF92 1 28.9 Weakly correlated
23 ZNF695 1 28.9 Weakly correlated
24 ZNF682 1 28.9 Weakly correlated
25 ZNF547 1 74.0 Weakly correlated
26 ZNF44 1 43.0 Weakly correlated
27 ZNF274 1 99.0 Weakly correlated
28 ZNF257 1 0.0 Weakly correlated
29 ZNF141 1 43.0 Weakly correlated
30 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 60 28.9 Weakly correlated
2 ZNF584 2 99.0 Weakly correlated
3 ZNF597 2 94.0 Highly correlated
4 ZNF197 2 99.0 Weakly correlated
5 ZNF589 2 28.9 Weakly correlated
6 ZNF175 2 94.0 Highly correlated
7 ZNF257 1 0.0 Weakly correlated
8 ZNF793 1 99.0 Weakly correlated
9 ZNF44 1 43.0 Weakly correlated
10 ZNF780A 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats