ZRdb KZFP & Repeats
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LTR_LTR76

  • Name
    LTR76
  • Repbase
    LTR76
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000581
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcgggaaattaaagaaanaaannnaaataaaattaaaaagaaagagaaataagctttcctgtattaggctgacttgtcccagaggcagcaacaggcacagcccagacccaggaaaagtcttgataatactatctaatgtgctctggagactctcccagcactccctcaacatagggagaagaaaaancaaattttcctttgttttatggnatgagtttatagattcctgttctctgtaactagtgacttcaagtattctgttttatctaagnagtacagcgaaggtcatgagaagcctgagcaggcctgaactacagccgcctgggcaccatagtgaaggttatgggataagcccgtgcaannggcnctagagcaaacctagataacggacatctgggttgcntggcaacggtcatgtgtaatcctgagttatgaacctgtcacaatttgattaactgtctttgtcctgcctctgtatccctgctttcacgccactgtaagcttgcttcaagctagcccacccccttttgtgaagtgtgtataaaagtcaagtgctgtctttgttctgggcccagtctttggacgttgagtccgctgggtctgagtgcactcaataaaagatcctcctgtttcaccccgaggtctctctcgtcctcctgattcccgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF845 65 28.9 Weakly correlated
2 ZNF382 63 99.0 Weakly correlated
3 ZNF766 43 43.0 Weakly correlated
4 ZNF547 33 74.0 Highly correlated
5 ZNF324 30 99.0 Weakly correlated
6 ZKSCAN8 26 160.0 Weakly correlated
7 ZNF320 26 28.9 Weakly correlated
8 ZNF610 26 28.9 Weakly correlated
9 ZNF589 25 28.9 Weakly correlated
10 ZFP37 21 99.0 Weakly correlated
11 ZNF528 21 43.0 Weakly correlated
12 ZNF175 21 94.0 Weakly correlated
13 ZNF197 20 99.0 Weakly correlated
14 ZNF584 20 99.0 Weakly correlated
15 ZNF554 19 99.0 Weakly correlated
16 ZNF558 19 99.0 Weakly correlated
17 ZNF30 17 94.0 Weakly correlated
18 ZNF549 16 87.0 Weakly correlated
19 ZNF680 16 28.9 Weakly correlated
20 ZNF18 15 160.0 Weakly correlated
21 ZNF816 15 28.9 Weakly correlated
22 ZIM3 13 87.0 Weakly correlated
23 ZNF8 13 99.0 Weakly correlated
24 ZNF394 12 99.0 Weakly correlated
25 ZKSCAN1 12 160.0 Weakly correlated
26 ZNF486 11 8.6 Weakly correlated
27 ZNF669 10 43.0 Weakly correlated
28 ZNF317 9 99.0 Weakly correlated
29 ZNF263 8 180.0 Weakly correlated
30 ZNF2 7 99.0 Weakly correlated
31 ZNF429 7 28.9 Weakly correlated
32 ZNF682 6 28.9 Weakly correlated
33 ZNF274 6 99.0 Weakly correlated
34 ZNF419 5 28.9 Weakly correlated
35 ZNF184 5 99.0 Weakly correlated
36 ZFP69B 4 99.0 Weakly correlated
37 ZNF585B 4 99.0 Weakly correlated
38 ZNF33A 4 99.0 Weakly correlated
39 ZNF440 3 28.9 Weakly correlated
40 ZNF101 3 43.0 Weakly correlated
41 ZNF701 3 28.9 Weakly correlated
42 ZNF251 3 94.0 Weakly correlated
43 ZNF28 3 28.9 Weakly correlated
44 ZNF331 3 94.0 Weakly correlated
45 ZNF679 2 28.9 Weakly correlated
46 ZNF418 2 43.0 Weakly correlated
47 ZNF793 2 99.0 Weakly correlated
48 ZNF765 2 8.6 Weakly correlated
49 ZNF735 2 28.9 Weakly correlated
50 ZNF705D 2 28.9 Weakly correlated
51 ZNF705B 2 28.9 Weakly correlated
52 ZNF595 2 43.0 Weakly correlated
53 ZNF586 2 43.0 Weakly correlated
54 ZNF563 2 28.9 Weakly correlated
55 ZNF560 2 43.0 Weakly correlated
56 ZNF34 2 99.0 Weakly correlated
57 ZNF490 2 43.0 Weakly correlated
58 ZNF37A 2 99.0 Weakly correlated
59 ZNF479 1 6.4 Weakly correlated
60 ZNF510 1 99.0 Weakly correlated
61 ZNF852 1 94.0 Weakly correlated
62 ZNF140 1 99.0 Weakly correlated
63 ZNF222 1 43.0 Weakly correlated
64 ZNF786 1 99.0 Weakly correlated
65 ZNF778 1 74.0 Highly correlated
66 ZNF224 1 69.0 Moderately correlated
67 ZNF337 1 43.0 Weakly correlated
68 ZNF730 1 19.6 Weakly correlated
69 ZNF727 1 19.6 Weakly correlated
70 ZNF284 1 43.0 Weakly correlated
71 ZNF44 1 43.0 Weakly correlated
72 ZNF695 1 28.9 Weakly correlated
73 ZNF230 1 28.9 Weakly correlated
74 ZNF248 1 99.0 Weakly correlated
75 ZNF506 1 28.9 Weakly correlated
76 ZNF454 1 99.0 Weakly correlated
77 ZNF658 1 99.0 Weakly correlated
78 ZNF257 1 0.0 Weakly correlated
79 ZNF264 1 99.0 Weakly correlated
80 ZNF268 1 94.0 Weakly correlated
81 ZNF585A 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 12 28.9 Weakly correlated
2 ZNF584 10 99.0 Weakly correlated
3 ZNF197 9 99.0 Weakly correlated
4 ZIM3 8 87.0 Weakly correlated
5 ZNF175 8 94.0 Weakly correlated
6 ZNF429 6 28.9 Weakly correlated
7 ZNF324 6 99.0 Weakly correlated
8 ZNF845 6 28.9 Weakly correlated
9 ZNF320 6 28.9 Weakly correlated
10 ZNF30 3 94.0 Weakly correlated
11 ZNF682 3 28.9 Weakly correlated
12 ZFP37 2 99.0 Weakly correlated
13 ZNF558 2 99.0 Weakly correlated
14 ZNF440 2 28.9 Weakly correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF18 2 160.0 Weakly correlated
17 ZNF680 2 28.9 Weakly correlated
18 ZNF766 1 43.0 Weakly correlated
19 ZNF284 1 43.0 Weakly correlated
20 ZNF248 1 99.0 Weakly correlated
21 ZNF44 1 43.0 Weakly correlated
22 ZNF528 1 43.0 Weakly correlated
23 ZNF585A 1 99.0 Weakly correlated
24 ZNF816 1 28.9 Weakly correlated
25 ZNF101 1 43.0 Weakly correlated
26 ZNF510 1 99.0 Weakly correlated
27 ZNF486 1 8.6 Weakly correlated
28 ZNF679 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF175 94.0 Weakly correlated
3 ZNF197 99.0 Weakly correlated
4 ZNF324 99.0 Weakly correlated
5 ZNF584 99.0 Weakly correlated
6 ZNF589 28.9 Weakly correlated