ZRdb KZFP & Repeats
...

LTR_LTR75B

  • Name
    LTR75B
  • Repbase
    LTR75B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000580
Description :

Very similar to LTR75.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagggaacggctctgccgtggcgccctggcgaccttgcacgtctccacataggccacgtaggcaaggctcgaccgcagtctgacccgagtcttggcggaatgccctgcgattcctcctggagcangggaagataagcagccttgtgaggagctgccacgaggcagtttctcatccgcctccctatcttgcgggaggctgnccacaaggccgtttctcatccgtctccctggtttcagttgagcacgggactttccaccttgcnnncccccttccccttagggtacagctgcaggcttctgtgtctataaaactgcttggctgtagtttagagttggctcctcancggcagagcgacccaccgctcgtgccgtctgtcatctggcccctccggttcggtgtcgtcctgtgcgcgggactagggacgcggggagctgacaccatgctgatcttgcttttgctgtctgtgtaagtaataaactgtctgaatccatttgggctcattgtctccttaccggccgaatctatggaagtgtggcaagccaacctagcagctgccctgttagccaccgcgctgctgcttagggactgcttgaccgcttgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 25 99.0 Highly correlated
2 ZNF263 12 180.0 Weakly correlated
3 ZKSCAN1 7 160.0 Weakly correlated
4 ZNF701 6 28.9 Weakly correlated
5 ZFP37 5 99.0 Highly correlated
6 ZNF554 5 99.0 Highly correlated
7 ZNF18 5 160.0 Weakly correlated
8 ZNF394 4 99.0 Highly correlated
9 ZNF766 3 43.0 Weakly correlated
10 ZNF680 3 28.9 Weakly correlated
11 ZNF274 3 99.0 Highly correlated
12 ZNF2 3 99.0 Highly correlated
13 ZNF317 3 99.0 Highly correlated
14 ZNF324 3 99.0 Highly correlated
15 ZNF610 3 28.9 Weakly correlated
16 ZNF534 3 19.6 Weakly correlated
17 ZNF101 2 43.0 Weakly correlated
18 ZNF8 2 99.0 Highly correlated
19 ZNF793 2 99.0 Highly correlated
20 ZNF723 2 15.2 Weakly correlated
21 ZNF705D 2 28.9 Weakly correlated
22 ZFP57 2 87.0 Moderately correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZFP69B 2 99.0 Highly correlated
25 ZKSCAN8 2 160.0 Weakly correlated
26 ZFP30 2 99.0 Highly correlated
27 ZKSCAN5 2 160.0 Weakly correlated
28 ZNF257 2 0.0 Weakly correlated
29 ZKSCAN2 1 180.0 Weakly correlated
30 ZNF93 1 8.6 Weakly correlated
31 ZNF133 1 99.0 Highly correlated
32 ZNF789 1 99.0 Highly correlated
33 ZNF780A 1 43.0 Weakly correlated
34 ZNF175 1 94.0 Moderately correlated
35 ZNF202 1 160.0 Weakly correlated
36 ZNF528 1 43.0 Weakly correlated
37 ZIM3 1 87.0 Moderately correlated
38 ZNF605 1 99.0 Highly correlated
39 ZNF597 1 94.0 Moderately correlated
40 ZNF585A 1 99.0 Highly correlated
41 ZNF558 1 99.0 Highly correlated
42 ZNF429 1 28.9 Weakly correlated
43 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 3 180.0 Weakly correlated
2 ZNF534 2 19.6 Weakly correlated
3 ZNF680 2 28.9 Weakly correlated
4 ZIM3 1 87.0 Moderately correlated
5 ZNF257 1 0.0 Weakly correlated
6 ZNF585A 1 99.0 Highly correlated
7 ZNF610 1 28.9 Weakly correlated
8 ZNF789 1 99.0 Highly correlated
9 ZFP30 1 99.0 Highly correlated
10 ZNF780A 1 43.0 Weakly correlated
11 ZNF723 1 15.2 Weakly correlated
12 ZNF429 1 28.9 Weakly correlated
13 ZNF324 1 99.0 Highly correlated
14 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats