ZRdb KZFP & Repeats
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LTR_LTR75

  • Name
    LTR75
  • Repbase
    LTR75
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000578
Description :

Putative LTR of ancient class III retrovirus-like element. 5 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaggggaacggctccgccatggcgccctggcgaccttgcacgtatccacataggccacgcaggcaaaggcttgaaccgcagctnatctgagtcttggcagaacgccttgtgatcctcccggaacacgagaggatgggaggcttgtgaggagctgctncgaggccatctcccactcgcctccctatctcccctgggaggctgtcatgagacagtttctcatcgcctcccgggttctgatgaggtatggggctttctgccccgcccccctcaggatagagctgcagantataaaaccgcttagctgcagtctagaattggctcctcagcaacggggtatcccacaactcgcgttgcagtcatccggccccttttgtttcggtgtcgtcctttttggtgtgtgggacaaggaccgcggggagctggcacctttggctactcttcctttcgctgtctatgtaagtaataaactgtctgaatctaaaagtggctcgttgtatctttaccggccgaatcagtcaggccttggccttggccttgccttgtctcgtgtgtgcttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Highly correlated
2 ZNF766 17 43.0 Weakly correlated
3 ZNF394 12 99.0 Highly correlated
4 ZNF263 11 180.0 Weakly correlated
5 ZFP37 9 99.0 Highly correlated
6 ZNF175 8 94.0 Moderately correlated
7 ZNF18 7 160.0 Weakly correlated
8 ZNF2 6 99.0 Highly correlated
9 ZNF589 6 28.9 Weakly correlated
10 ZNF197 6 99.0 Highly correlated
11 ZKSCAN8 5 160.0 Weakly correlated
12 ZNF554 5 99.0 Highly correlated
13 ZFP69B 5 99.0 Highly correlated
14 ZNF680 5 28.9 Weakly correlated
15 ZKSCAN1 4 160.0 Weakly correlated
16 ZNF584 3 99.0 Highly correlated
17 ZNF479 3 6.4 Weakly correlated
18 ZNF534 3 19.6 Weakly correlated
19 ZNF317 3 99.0 Highly correlated
20 ZNF133 3 99.0 Highly correlated
21 ZNF101 3 43.0 Weakly correlated
22 ZKSCAN5 3 160.0 Weakly correlated
23 ZNF723 2 15.2 Weakly correlated
24 ZNF610 2 28.9 Weakly correlated
25 ZNF75D 2 94.0 Moderately correlated
26 ZNF786 2 99.0 Highly correlated
27 ZNF558 2 99.0 Highly correlated
28 ZNF816 2 28.9 Weakly correlated
29 ZNF91 2 6.0 Weakly correlated
30 ZIM3 2 87.0 Moderately correlated
31 ZKSCAN2 2 180.0 Weakly correlated
32 ZNF324 2 99.0 Highly correlated
33 ZNF701 1 28.9 Weakly correlated
34 ZNF878 1 43.0 Weakly correlated
35 ZNF84 1 99.0 Highly correlated
36 ZNF793 1 99.0 Highly correlated
37 ZNF792 1 94.0 Moderately correlated
38 ZNF140 1 99.0 Highly correlated
39 ZNF778 1 74.0 Weakly correlated
40 ZNF182 1 99.0 Highly correlated
41 ZNF251 1 94.0 Moderately correlated
42 ZNF75A 1 94.0 Moderately correlated
43 ZNF735 1 28.9 Weakly correlated
44 ZNF274 1 99.0 Highly correlated
45 ZNF510 1 99.0 Highly correlated
46 ZNF695 1 28.9 Weakly correlated
47 ZNF320 1 28.9 Weakly correlated
48 ZNF674 1 99.0 Highly correlated
49 ZNF641 1 99.0 Highly correlated
50 ZNF343 1 74.0 Weakly correlated
51 ZNF425 1 94.0 Moderately correlated
52 ZNF485 1 94.0 Moderately correlated
53 ZNF486 1 8.6 Weakly correlated
54 ZNF549 1 87.0 Moderately correlated
55 ZNF490 1 43.0 Weakly correlated
56 ZNF528 1 43.0 Weakly correlated
57 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 2 19.6 Weakly correlated
2 ZNF723 2 15.2 Weakly correlated
3 ZNF75D 1 94.0 Moderately correlated
4 ZIM3 1 87.0 Moderately correlated
5 ZNF735 1 28.9 Weakly correlated
6 ZNF382 1 99.0 Highly correlated
7 ZNF175 1 94.0 Moderately correlated
8 ZNF2 1 99.0 Highly correlated
9 ZNF766 1 43.0 Weakly correlated
10 ZNF816 1 28.9 Weakly correlated
11 ZNF793 1 99.0 Highly correlated
12 ZNF680 1 28.9 Weakly correlated
13 ZNF589 1 28.9 Weakly correlated
14 ZNF584 1 99.0 Highly correlated
15 ZNF197 1 99.0 Highly correlated
16 ZNF490 1 43.0 Weakly correlated
17 ZNF263 1 180.0 Weakly correlated
18 ZNF133 1 99.0 Highly correlated
19 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats