ZRdb KZFP & Repeats
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LTR_LTR72B

  • Name
    LTR72B
  • Repbase
    LTR72B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000576
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tggttttgtaacccagggtccccgggttttngggtacgcactgtgaaaaagtacccacttgtaactgttgcaccttgagttcttgttgtttcaaaaagttccaggaagaagctcagccccggaaaaacaaaaaccggttggatccagagatgcctgagttggagatgaactttggcgaactctcctcattaccatactaaaaaccccgcccagggaggagcttattcgccattttctatacatgcgacgtatgtagaagcatgatcggcgactgcgcctgcgctgcctttactccacctctacatacaatgactcagctaaccagcccaataaaagccctgttttcacctttgttcggggaggcactgctttggggaactatccccggtgtcctccttacttgttgcaagtaataaaatccccttgttaaatcctccttggttgtggtcattggactgtcacccgccaagcgatcgaacccacccgttgtgtgggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 12 6.4 Weakly correlated
2 ZNF382 6 99.0 Weakly correlated
3 ZNF766 3 43.0 Weakly correlated
4 ZNF263 3 180.0 Weakly correlated
5 ZIM3 2 87.0 Weakly correlated
6 ZNF558 2 99.0 Weakly correlated
7 ZNF554 2 99.0 Weakly correlated
8 ZNF394 2 99.0 Weakly correlated
9 ZNF680 2 28.9 Weakly correlated
10 ZNF317 2 99.0 Weakly correlated
11 ZNF695 1 28.9 Weakly correlated
12 ZNF701 1 28.9 Weakly correlated
13 ZNF723 1 15.2 Weakly correlated
14 ZNF679 1 28.9 Weakly correlated
15 ZNF671 1 94.0 Weakly correlated
16 ZFP37 1 99.0 Weakly correlated
17 ZNF823 1 43.0 Weakly correlated
18 ZNF597 1 94.0 Weakly correlated
19 ZNF589 1 28.9 Weakly correlated
20 ZNF584 1 99.0 Weakly correlated
21 ZNF534 1 19.6 Weakly correlated
22 ZNF506 1 28.9 Weakly correlated
23 ZNF324 1 99.0 Weakly correlated
24 ZNF2 1 99.0 Weakly correlated
25 ZNF273 1 28.9 Weakly correlated
26 ZNF133 1 99.0 Weakly correlated
27 ZNF12 1 99.0 Weakly correlated
28 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 8 6.4 Weakly correlated
2 ZNF133 1 99.0 Weakly correlated
3 ZNF506 1 28.9 Weakly correlated
4 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated