ZRdb KZFP & Repeats
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LTR_LTR72

  • Name
    LTR72
  • Repbase
    LTR72
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000575
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatgtaagcagacagggagggtctccagggattataggaatttaatcaacttgagcaatcagcctgttttacagcctcctgccctgcagcctgtttttccccaaaccctgtgtggaatgcggtcacctngtcggttggaaccagctcctgacagaccccggcaacttatagatgaacccgagtgaactttcctcattaccatgctaaagtctccaccccngggaggagctatagcttcattaccataacatgcgacctatgtgctggcatgatgactcactgcgtctgcgccactgggacccctcctctacatgcgatgacgcaccctctcccctctccatcgccccataaaaccctcctgtcactttccctcggggagacactgctttggagaatactcccagtgtcctccttacttgtgccaagtaataaaactcctattgatcaaaacctgcgttctcgtggagagtcgtttgttactcgccaggcgaacgaaccccggtttttttcgggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 32 99.0 Weakly correlated
2 ZFP37 9 99.0 Weakly correlated
3 ZNF263 9 180.0 Weakly correlated
4 ZNF324 9 99.0 Weakly correlated
5 ZNF394 8 99.0 Weakly correlated
6 ZFP69B 7 99.0 Weakly correlated
7 ZNF2 7 99.0 Weakly correlated
8 ZNF766 6 43.0 Weakly correlated
9 ZNF554 6 99.0 Weakly correlated
10 ZNF792 5 94.0 Weakly correlated
11 ZNF558 5 99.0 Weakly correlated
12 ZNF528 5 43.0 Weakly correlated
13 ZKSCAN1 4 160.0 Weakly correlated
14 ZNF701 4 28.9 Weakly correlated
15 ZNF610 4 28.9 Weakly correlated
16 ZNF41 3 99.0 Weakly correlated
17 ZNF101 3 43.0 Weakly correlated
18 ZNF257 3 0.0 Weakly correlated
19 ZNF28 2 28.9 Weakly correlated
20 ZNF441 2 43.0 Weakly correlated
21 ZNF682 2 28.9 Weakly correlated
22 ZNF799 1 43.0 Weakly correlated
23 ZNF317 1 99.0 Weakly correlated
24 ZKSCAN8 1 160.0 Weakly correlated
25 ZNF778 1 74.0 Highly correlated
26 ZNF723 1 15.2 Weakly correlated
27 ZNF707 1 74.0 Highly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF124 1 43.0 Weakly correlated
30 ZNF695 1 28.9 Weakly correlated
31 ZNF680 1 28.9 Weakly correlated
32 ZNF141 1 43.0 Weakly correlated
33 ZNF18 1 160.0 Weakly correlated
34 ZNF222 1 43.0 Weakly correlated
35 ZNF519 1 19.6 Weakly correlated
36 ZNF490 1 43.0 Weakly correlated
37 ZNF486 1 8.6 Weakly correlated
38 ZNF483 1 99.0 Weakly correlated
39 RBAK 1 99.0 Weakly correlated
40 ZNF264 1 99.0 Weakly correlated
41 ZNF273 1 28.9 Weakly correlated
42 ZNF350 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP37 5 99.0 Weakly correlated
2 ZNF554 4 99.0 Weakly correlated
3 ZNF263 4 180.0 Weakly correlated
4 ZNF766 2 43.0 Weakly correlated
5 ZNF257 2 0.0 Weakly correlated
6 ZNF101 2 43.0 Weakly correlated
7 ZNF141 1 43.0 Weakly correlated
8 ZNF28 1 28.9 Weakly correlated
9 ZNF701 1 28.9 Weakly correlated
10 ZNF558 1 99.0 Weakly correlated
11 ZNF2 1 99.0 Weakly correlated
12 ZNF490 1 43.0 Weakly correlated
13 ZNF792 1 94.0 Weakly correlated
14 ZNF324 1 99.0 Weakly correlated
15 ZNF350 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats