ZRdb KZFP & Repeats
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LTR_LTR71B

  • Name
    LTR71B
  • Repbase
    LTR71B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000574
Description :

LTR71B and LTR71A share an 85% identical, ~225-bp 3' terminal region.NOTE: There is no reported HERVP71B (only HERVP71 and HERVP71A).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaggaaataatgtatacagtggtccatttccaagacaaagtgccttgaatcggcttaggtcagcaaactacagaagaaacaggatatactaggcccctgcttggatagccgatgcctgcttgtcggcctcccccttcccccnnccnccccccccccttagttgccctcacccgaaccaaagaagtttagtctaagatgaaagtttactagcctgcaaaatagctcgctttgtctgttcttatcagcctgcccagctacttaggtcataagtcaaatacttgaagagcccctgagctaactaggattgcaatgcattgtgggctgcaacaaaatgcagcaagacaaccctaaagaaaacacctaaagcccctacccaacaaccaataggcgacgtccgggaagattgtgaccccatagtactcagcctatgaggaaccgggggagggacctgcgcactaggggataaattgcttgttgaaactgtgctgggtgtgcctgcccatcagacacccgatcttgcaagaccgtcattaaaagtctcactttcgctgttctccgggtctctgagtccattctttgggtttggacgggtgagtttgtttctcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 68 99.0 Weakly correlated
2 ZNF766 56 43.0 Highly correlated
3 ZFP37 23 99.0 Weakly correlated
4 ZNF610 22 28.9 Moderately correlated
5 ZNF394 22 99.0 Weakly correlated
6 ZNF680 22 28.9 Moderately correlated
7 ZNF2 21 99.0 Weakly correlated
8 ZNF101 19 43.0 Highly correlated
9 ZNF18 17 160.0 Weakly correlated
10 ZKSCAN8 17 160.0 Weakly correlated
11 ZNF197 16 99.0 Weakly correlated
12 ZNF350 16 99.0 Weakly correlated
13 ZNF425 15 94.0 Weakly correlated
14 ZNF175 15 94.0 Weakly correlated
15 ZNF324 14 99.0 Weakly correlated
16 ZNF589 14 28.9 Moderately correlated
17 ZFP69B 12 99.0 Weakly correlated
18 ZNF584 12 99.0 Weakly correlated
19 ZNF558 11 99.0 Weakly correlated
20 ZNF264 9 99.0 Weakly correlated
21 ZNF263 8 180.0 Weakly correlated
22 ZNF479 6 6.4 Weakly correlated
23 ZKSCAN1 5 160.0 Weakly correlated
24 ZNF786 5 99.0 Weakly correlated
25 ZNF528 5 43.0 Highly correlated
26 ZNF792 5 94.0 Weakly correlated
27 ZNF705B 4 28.9 Moderately correlated
28 ZNF695 4 28.9 Moderately correlated
29 ZNF778 4 74.0 Weakly correlated
30 ZNF677 4 99.0 Weakly correlated
31 ZNF257 4 0.0 Weakly correlated
32 ZNF554 4 99.0 Weakly correlated
33 ZNF780A 3 43.0 Highly correlated
34 ZNF682 3 28.9 Moderately correlated
35 ZNF230 3 28.9 Moderately correlated
36 ZNF182 3 99.0 Weakly correlated
37 ZNF506 3 28.9 Moderately correlated
38 ZNF641 3 99.0 Weakly correlated
39 ZNF534 2 19.6 Weakly correlated
40 ZNF679 2 28.9 Moderately correlated
41 ZNF707 2 74.0 Weakly correlated
42 ZNF723 2 15.2 Weakly correlated
43 ZIM3 2 87.0 Weakly correlated
44 ZNF441 2 43.0 Highly correlated
45 ZNF251 2 94.0 Weakly correlated
46 ZNF317 1 99.0 Weakly correlated
47 ZNF93 1 8.6 Weakly correlated
48 ZNF92 1 28.9 Moderately correlated
49 ZNF879 1 99.0 Weakly correlated
50 ZNF84 1 99.0 Weakly correlated
51 ZNF823 1 43.0 Highly correlated
52 ZNF799 1 43.0 Highly correlated
53 ZNF793 1 99.0 Weakly correlated
54 ZNF140 1 99.0 Weakly correlated
55 ZNF19 1 99.0 Weakly correlated
56 ZNF282 1 319.0 Weakly correlated
57 ZNF747 1 43.0 Highly correlated
58 ZNF585A 1 99.0 Weakly correlated
59 ZNF337 1 43.0 Highly correlated
60 ZNF705D 1 28.9 Moderately correlated
61 ZNF440 1 28.9 Moderately correlated
62 ZNF460 1 74.0 Weakly correlated
63 ZNF485 1 94.0 Weakly correlated
64 ZNF486 1 8.6 Weakly correlated
65 ZNF519 1 19.6 Weakly correlated
66 ZNF649 1 28.9 Moderately correlated
67 ZNF547 1 74.0 Weakly correlated
68 ZNF557 1 15.2 Weakly correlated
69 ZNF607 1 43.0 Highly correlated
70 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 9 99.0 Weakly correlated
2 ZNF680 9 28.9 Moderately correlated
3 ZNF589 8 28.9 Moderately correlated
4 ZNF175 5 94.0 Weakly correlated
5 ZNF584 4 99.0 Weakly correlated
6 ZNF677 4 99.0 Weakly correlated
7 ZNF695 2 28.9 Moderately correlated
8 ZNF425 2 94.0 Weakly correlated
9 ZNF792 2 94.0 Weakly correlated
10 ZNF101 1 43.0 Highly correlated
11 ZFP69B 1 99.0 Weakly correlated
12 ZNF479 1 6.4 Weakly correlated
13 ZNF264 1 99.0 Weakly correlated
14 ZNF778 1 74.0 Weakly correlated
15 ZIM3 1 87.0 Weakly correlated
16 ZKSCAN1 1 160.0 Weakly correlated
17 ZNF140 1 99.0 Weakly correlated
18 ZNF263 1 180.0 Weakly correlated
19 ZNF485 1 94.0 Weakly correlated
20 ZNF350 1 99.0 Weakly correlated
21 ZNF324 1 99.0 Weakly correlated
22 ZNF440 1 28.9 Moderately correlated
23 ZNF257 1 0.0 Weakly correlated
24 ZNF2 1 99.0 Weakly correlated
25 ZNF282 1 319.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF197 99.0 Weakly correlated
2 ZNF589 28.9 Moderately correlated
3 ZNF680 28.9 Moderately correlated