ZRdb KZFP & Repeats
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LTR_LTR71A

  • Name
    LTR71A
  • Repbase
    LTR71A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000573
Description :

5bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgagaaaacattttaaatggtccattttcaaggcatgataaatctaagtactggcagccagcctgcggatgtaacaaaccgcacggctcatgcacctagaaggtcacgataagcgaacagaatgtagaggaggggtcagcccataaaagggaagaaagtttcgttattgggaaatcgaaacttaagcggggaaggggaccggggtataaccttataagggggataatgaaacttaggcgacgtccgggaagattgtaaccccatagtactcgaccaatgaggaactgggggagggacttgcgtgctaggagataaattacctgctgtaactgccccgggtgtgcctgcctaccagacacccgatcttgcaagaccgccattaaaagtctcgcttccgctgttcttcgtgtctccgagtccattctttgggtttggacgggtgagtgtgtttctcaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 32 43.0 Highly correlated
2 ZNF382 21 99.0 Weakly correlated
3 ZNF175 12 94.0 Weakly correlated
4 ZNF589 11 28.9 Moderately correlated
5 ZNF584 10 99.0 Weakly correlated
6 ZNF197 7 99.0 Weakly correlated
7 ZNF680 7 28.9 Moderately correlated
8 ZKSCAN8 7 160.0 Weakly correlated
9 ZNF554 5 99.0 Weakly correlated
10 ZNF506 5 28.9 Moderately correlated
11 ZNF394 5 99.0 Weakly correlated
12 ZFP69B 5 99.0 Weakly correlated
13 ZKSCAN1 4 160.0 Weakly correlated
14 ZNF2 4 99.0 Weakly correlated
15 ZNF610 4 28.9 Moderately correlated
16 ZFP37 3 99.0 Weakly correlated
17 ZNF425 3 94.0 Weakly correlated
18 ZNF18 3 160.0 Weakly correlated
19 ZNF101 3 43.0 Highly correlated
20 ZNF324 2 99.0 Weakly correlated
21 ZNF479 2 6.4 Weakly correlated
22 ZNF320 2 28.9 Moderately correlated
23 ZNF528 2 43.0 Highly correlated
24 ZNF558 2 99.0 Weakly correlated
25 ZNF705B 1 28.9 Moderately correlated
26 ZNF679 1 28.9 Moderately correlated
27 ZNF723 1 15.2 Weakly correlated
28 ZNF91 1 6.0 Weakly correlated
29 ZNF510 1 99.0 Weakly correlated
30 ZNF350 1 99.0 Weakly correlated
31 ZNF337 1 43.0 Highly correlated
32 ZNF263 1 180.0 Weakly correlated
33 ZNF251 1 94.0 Weakly correlated
34 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 4 28.9 Moderately correlated
2 ZNF175 2 94.0 Weakly correlated
3 ZNF584 2 99.0 Weakly correlated
4 ZNF197 2 99.0 Weakly correlated
5 ZNF589 2 28.9 Moderately correlated
6 ZNF766 2 43.0 Highly correlated
7 ZNF723 1 15.2 Weakly correlated
8 ZNF679 1 28.9 Moderately correlated
9 ZNF425 1 94.0 Weakly correlated
10 ZNF479 1 6.4 Weakly correlated
11 ZNF554 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats