ZRdb KZFP & Repeats
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LTR_LTR7

  • Name
    LTR7
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000571
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcaggcctctgagcccaagctaagccatcgcatcccctgtgacctgcacgtacacgtccagatggcctgaagtaactgaagaatcacaaagaagtgaanatgccctgccccgccttaactgatgacattccaccacaaaagaagtgaaaatggccngtccctgccttaactgatgacattaccttgtgaaattccttctcctggctcatcctggctcaaaaagctcccccactgagcaccttgcgacccccactcctgcccgccagagaacaacccccctttgactgtaattttcctttacctacccaaatcctataaaacggccccacccctatctcccttcgctgactctcttttcggactcagcccgcctgcacccaggtgataaacagccttgttgctcacacaaagcctgtttggtggtctcttcacacggacgcgcgtgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF700 115 28.9 Weakly correlated
2 ZNF766 29 43.0 Weakly correlated
3 ZNF382 25 99.0 Weakly correlated
4 ZNF394 14 99.0 Weakly correlated
5 ZNF589 13 28.9 Weakly correlated
6 ZNF175 13 94.0 Weakly correlated
7 ZFP37 11 99.0 Weakly correlated
8 ZNF705B 10 28.9 Weakly correlated
9 ZNF735 9 28.9 Weakly correlated
10 ZNF101 9 43.0 Weakly correlated
11 ZFP69B 8 99.0 Weakly correlated
12 ZNF324 8 99.0 Weakly correlated
13 ZNF317 8 99.0 Weakly correlated
14 ZNF18 8 160.0 Weakly correlated
15 ZNF486 7 8.6 Moderately correlated
16 ZNF2 7 99.0 Weakly correlated
17 ZNF679 7 28.9 Weakly correlated
18 ZNF705D 6 28.9 Weakly correlated
19 ZNF584 5 99.0 Weakly correlated
20 ZNF274 5 99.0 Weakly correlated
21 ZNF490 5 43.0 Weakly correlated
22 ZNF680 4 28.9 Weakly correlated
23 ZNF534 4 19.6 Highly correlated
24 ZNF350 4 99.0 Weakly correlated
25 ZNF264 3 99.0 Weakly correlated
26 ZIM3 3 87.0 Weakly correlated
27 ZNF282 3 319.0 Weakly correlated
28 ZNF479 3 6.4 Moderately correlated
29 ZNF610 3 28.9 Weakly correlated
30 ZKSCAN8 3 160.0 Weakly correlated
31 ZNF597 3 94.0 Weakly correlated
32 ZNF792 3 94.0 Weakly correlated
33 ZNF554 2 99.0 Weakly correlated
34 ZNF547 2 74.0 Weakly correlated
35 ZNF471 2 94.0 Weakly correlated
36 ZNF429 2 28.9 Weakly correlated
37 ZNF28 2 28.9 Weakly correlated
38 ZNF263 2 180.0 Weakly correlated
39 ZNF780A 2 43.0 Weakly correlated
40 ZNF182 2 99.0 Weakly correlated
41 ZNF17 2 69.0 Weakly correlated
42 ZNF140 2 99.0 Weakly correlated
43 ZNF136 2 74.0 Weakly correlated
44 ZNF808 2 19.6 Highly correlated
45 ZNF677 1 99.0 Weakly correlated
46 ZNF468 1 28.9 Weakly correlated
47 ZNF674 1 99.0 Weakly correlated
48 ZNF695 1 28.9 Weakly correlated
49 ZNF701 1 28.9 Weakly correlated
50 ZNF763 1 15.2 Moderately correlated
51 ZNF780B 1 74.0 Weakly correlated
52 ZNF786 1 99.0 Weakly correlated
53 ZNF793 1 99.0 Weakly correlated
54 ZNF8 1 99.0 Weakly correlated
55 ZNF92 1 28.9 Weakly correlated
56 ZNF257 1 0.0 Weakly correlated
57 ZFP57 1 87.0 Weakly correlated
58 ZFP69 1 99.0 Weakly correlated
59 ZKSCAN1 1 160.0 Weakly correlated
60 ZKSCAN5 1 160.0 Weakly correlated
61 ZNF133 1 99.0 Weakly correlated
62 ZNF135 1 94.0 Weakly correlated
63 ZNF197 1 99.0 Weakly correlated
64 ZNF202 1 160.0 Weakly correlated
65 ZNF251 1 94.0 Weakly correlated
66 ZNF641 1 99.0 Weakly correlated
67 ZNF334 1 99.0 Weakly correlated
68 ZNF337 1 43.0 Weakly correlated
69 ZNF425 1 94.0 Weakly correlated
70 ZNF441 1 43.0 Weakly correlated
71 ZNF506 1 28.9 Weakly correlated
72 ZNF549 1 87.0 Weakly correlated
73 ZNF558 1 99.0 Weakly correlated
74 ZNF563 1 28.9 Weakly correlated
75 ZNF626 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF735 8 28.9 Weakly correlated
2 ZFP69B 2 99.0 Weakly correlated
3 ZNF101 2 43.0 Weakly correlated
4 ZNF140 2 99.0 Weakly correlated
5 ZNF350 2 99.0 Weakly correlated
6 ZNF317 2 99.0 Weakly correlated
7 ZNF780A 2 43.0 Weakly correlated
8 ZKSCAN1 1 160.0 Weakly correlated
9 ZKSCAN5 1 160.0 Weakly correlated
10 ZNF133 1 99.0 Weakly correlated
11 ZNF766 1 43.0 Weakly correlated
12 ZNF18 1 160.0 Weakly correlated
13 ZNF202 1 160.0 Weakly correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF471 1 94.0 Weakly correlated
16 ZNF534 1 19.6 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats