ZRdb KZFP & Repeats
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LTR_LTR6A

  • Name
    LTR6A
  • Repbase
    LTR6A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000569
Description :

Some copies present at orthologous site in old world monkeys, othersspecific to apes.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgataccctaccttgttttaacctgaatngactctcccttagctgagagagccggacggactccatttggctccttcacttgcaagacatcaagggctccttacccacccccttcctcaaggacttaacttgtgcaagctgactcccagcacatcaaagagtgcaattaactgataaggtactgnggcaagctatgtccgcagttcccaggaattcgcccggntgatagtaccctaaagcccccgcgtttgtgtccggtngatagcacccaaagcccccgcacctatcaccttgtgatggatttaaagcccctgcacctggaactgtttgttttcctgtaaccatttgtctttttaacttttttgcctgttttgcttctgtaagattgcttcagctaggctccccctcccctttctaaaccaaagtataaaagaaaatctagccccttcttcggggccgagagaattttgagcgctagccgtctctcggtcgccggctaataaaggactcctgaattcgtctcaaagtgtggcgtttctctataactcgctcggttacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 37 43.0 Weakly correlated
2 ZNF175 27 94.0 Weakly correlated
3 ZNF197 23 99.0 Weakly correlated
4 ZNF584 22 99.0 Weakly correlated
5 ZNF589 18 28.9 Highly correlated
6 ZKSCAN8 13 160.0 Weakly correlated
7 ZNF394 7 99.0 Weakly correlated
8 ZNF468 7 28.9 Highly correlated
9 ZFP37 4 99.0 Weakly correlated
10 ZNF324 4 99.0 Weakly correlated
11 ZNF716 4 19.6 Moderately correlated
12 ZNF679 3 28.9 Highly correlated
13 ZNF263 3 180.0 Weakly correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF320 3 28.9 Highly correlated
16 ZNF382 3 99.0 Weakly correlated
17 ZNF695 2 28.9 Highly correlated
18 ZNF585B 2 99.0 Weakly correlated
19 ZNF441 2 43.0 Weakly correlated
20 ZNF610 2 28.9 Highly correlated
21 ZNF75D 2 94.0 Weakly correlated
22 ZNF274 2 99.0 Weakly correlated
23 ZNF251 2 94.0 Weakly correlated
24 ZIM3 2 87.0 Weakly correlated
25 ZFP69B 2 99.0 Weakly correlated
26 ZNF707 1 74.0 Weakly correlated
27 ZNF723 1 15.2 Moderately correlated
28 ZNF680 1 28.9 Highly correlated
29 ZNF675 1 8.6 Weakly correlated
30 ZNF674 1 99.0 Weakly correlated
31 ZNF786 1 99.0 Weakly correlated
32 ZNF641 1 99.0 Weakly correlated
33 ZNF93 1 8.6 Weakly correlated
34 ZNF597 1 94.0 Weakly correlated
35 ZNF587 1 28.9 Highly correlated
36 ZNF558 1 99.0 Weakly correlated
37 ZNF554 1 99.0 Weakly correlated
38 ZNF506 1 28.9 Highly correlated
39 ZNF486 1 8.6 Weakly correlated
40 ZNF485 1 94.0 Weakly correlated
41 ZNF425 1 94.0 Weakly correlated
42 ZNF350 1 99.0 Weakly correlated
43 ZNF317 1 99.0 Weakly correlated
44 ZNF2 1 99.0 Weakly correlated
45 ZNF28 1 28.9 Highly correlated
46 ZNF18 1 160.0 Weakly correlated
47 ZNF154 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 10 99.0 Weakly correlated
2 ZNF175 10 94.0 Weakly correlated
3 ZNF584 10 99.0 Weakly correlated
4 ZNF589 8 28.9 Highly correlated
5 ZNF468 6 28.9 Highly correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF154 1 94.0 Weakly correlated
8 ZNF587 1 28.9 Highly correlated
9 ZNF75D 1 94.0 Weakly correlated
10 ZNF101 1 43.0 Weakly correlated
11 ZNF320 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF468 28.9 Highly correlated
4 ZNF584 99.0 Weakly correlated
5 ZNF589 28.9 Highly correlated