ZRdb KZFP & Repeats
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LTR_LTR67B

  • Name
    LTR67B
  • Repbase
    LTR67B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000566
Description :

Extended to full-length. Eutherian. Quite similar to LTR33B and toMLT1N2.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcggatacggtggattggcgctcagcatccattccaacctccttctagtgtgccttcctgtactgcagaggctggaaagctaaaaactacatttcccagactcccttgcagctagggttctggatgcganttaggttccgccaatcagatgcactcgcgtgagatttggaaggcggaagtgaggcggaggccatcttcctgctgcttcggctgttttctgctggcaagcanggtcgtggagacgttgggtttttctgcagcagcgttccagtgtccagtcactagcttcgtgggtgtcgagaggcagttgcggcggcggcggcggcggcttcctgatccctggatcgcagctacggcggtgtgttcttgaagtcaacagttccagtggcggcctcctgattccccaccttcctgattgtggcagaggtagcagctcccctggcgggccagttctgcggtgttgttctgggagtcattcctggaggcccagcctagagcccgctcctccagcccttccaacgattttgtaagcacctaattccctgtattaaatccctttctgcttaaaatagctagagtggtttctgtttcctgcaactgaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 190 99.0 Highly correlated
2 ZNF92 108 28.9 Weakly correlated
3 ZIM3 76 87.0 Moderately correlated
4 ZNF766 70 43.0 Weakly correlated
5 ZNF263 66 180.0 Weakly correlated
6 ZNF394 40 99.0 Highly correlated
7 ZNF566 39 99.0 Highly correlated
8 ZNF2 37 99.0 Highly correlated
9 ZNF589 33 28.9 Weakly correlated
10 ZNF175 29 94.0 Moderately correlated
11 ZNF680 29 28.9 Weakly correlated
12 ZNF317 28 99.0 Highly correlated
13 ZNF479 26 6.4 Weakly correlated
14 ZNF584 26 99.0 Highly correlated
15 ZNF320 25 28.9 Weakly correlated
16 ZFP37 24 99.0 Highly correlated
17 ZNF554 21 99.0 Highly correlated
18 ZKSCAN1 20 160.0 Weakly correlated
19 ZNF610 18 28.9 Weakly correlated
20 ZNF197 16 99.0 Highly correlated
21 ZNF324 16 99.0 Highly correlated
22 ZNF679 16 28.9 Weakly correlated
23 ZFP69B 15 99.0 Highly correlated
24 ZNF18 15 160.0 Weakly correlated
25 ZKSCAN8 13 160.0 Weakly correlated
26 ZNF705B 13 28.9 Weakly correlated
27 ZNF528 12 43.0 Weakly correlated
28 ZFP57 11 87.0 Moderately correlated
29 ZNF251 11 94.0 Moderately correlated
30 ZNF547 11 74.0 Weakly correlated
31 ZNF549 11 87.0 Moderately correlated
32 ZNF597 11 94.0 Moderately correlated
33 ZNF778 11 74.0 Weakly correlated
34 ZNF101 10 43.0 Weakly correlated
35 ZNF486 10 8.6 Weakly correlated
36 ZNF534 10 19.6 Weakly correlated
37 ZNF701 10 28.9 Weakly correlated
38 ZNF257 9 0.0 Weakly correlated
39 ZNF33B 9 99.0 Highly correlated
40 ZNF519 9 19.6 Weakly correlated
41 ZNF707 8 74.0 Weakly correlated
42 ZNF723 8 15.2 Weakly correlated
43 ZNF558 7 99.0 Highly correlated
44 ZNF75D 7 94.0 Moderately correlated
45 ZNF793 7 99.0 Highly correlated
46 ZNF331 6 94.0 Moderately correlated
47 ZNF705D 6 28.9 Weakly correlated
48 ZNF786 6 99.0 Highly correlated
49 ZNF490 5 43.0 Weakly correlated
50 ZNF506 5 28.9 Weakly correlated
51 ZNF140 4 99.0 Highly correlated
52 ZNF350 4 99.0 Highly correlated
53 ZNF585B 4 99.0 Highly correlated
54 ZNF682 4 28.9 Weakly correlated
55 ZFP69 3 99.0 Highly correlated
56 ZNF133 3 99.0 Highly correlated
57 ZNF141 3 43.0 Weakly correlated
58 ZNF264 3 99.0 Highly correlated
59 ZNF274 3 99.0 Highly correlated
60 ZNF468 3 28.9 Weakly correlated
61 ZNF563 3 28.9 Weakly correlated
62 ZNF730 3 19.6 Weakly correlated
63 ZNF735 3 28.9 Weakly correlated
64 ZNF780B 3 74.0 Weakly correlated
65 ZNF8 3 99.0 Highly correlated
66 ZNF93 3 8.6 Weakly correlated
67 ZKSCAN5 2 160.0 Weakly correlated
68 ZNF124 2 43.0 Weakly correlated
69 ZNF189 2 99.0 Highly correlated
70 ZNF273 2 28.9 Weakly correlated
71 ZNF28 2 28.9 Weakly correlated
72 ZNF33A 2 99.0 Highly correlated
73 ZNF41 2 99.0 Highly correlated
74 ZNF429 2 28.9 Weakly correlated
75 ZNF441 2 43.0 Weakly correlated
76 ZNF483 2 99.0 Highly correlated
77 ZNF485 2 94.0 Moderately correlated
78 ZNF671 2 94.0 Moderately correlated
79 ZNF736 2 43.0 Weakly correlated
80 ZNF776 2 43.0 Weakly correlated
81 ZNF816 2 28.9 Weakly correlated
82 ZNF823 2 43.0 Weakly correlated
83 ZNF85 2 28.9 Weakly correlated
84 ZNF157 1 99.0 Highly correlated
85 ZNF182 1 99.0 Highly correlated
86 ZNF267 1 43.0 Weakly correlated
87 ZNF26 1 99.0 Highly correlated
88 ZNF282 1 319.0 Weakly correlated
89 ZNF283 1 99.0 Highly correlated
90 ZNF287 1 99.0 Highly correlated
91 ZNF354C 1 99.0 Highly correlated
92 ZNF419 1 28.9 Weakly correlated
93 ZNF430 1 19.6 Weakly correlated
94 ZNF436 1 180.0 Weakly correlated
95 ZNF440 1 28.9 Weakly correlated
96 ZNF44 1 43.0 Weakly correlated
97 ZNF461 1 99.0 Highly correlated
98 ZNF471 1 94.0 Moderately correlated
99 ZNF585A 1 99.0 Highly correlated
100 ZNF605 1 99.0 Highly correlated
101 ZNF611 1 19.6 Weakly correlated
102 ZNF684 1 99.0 Highly correlated
103 ZNF716 1 19.6 Weakly correlated
104 ZNF780A 1 43.0 Weakly correlated
105 ZNF792 1 94.0 Moderately correlated
106 ZNF808 1 19.6 Weakly correlated
107 ZNF845 1 28.9 Weakly correlated
108 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF566 37 99.0 Highly correlated
2 ZIM3 32 87.0 Moderately correlated
3 ZNF263 12 180.0 Weakly correlated
4 ZNF479 10 6.4 Weakly correlated
5 ZNF382 9 99.0 Highly correlated
6 ZNF33B 8 99.0 Highly correlated
7 ZNF680 7 28.9 Weakly correlated
8 ZNF528 5 43.0 Weakly correlated
9 ZNF707 5 74.0 Weakly correlated
10 ZFP57 4 87.0 Moderately correlated
11 ZNF793 4 99.0 Highly correlated
12 ZNF766 4 43.0 Weakly correlated
13 ZNF92 4 28.9 Weakly correlated
14 ZNF257 4 0.0 Weakly correlated
15 ZNF554 4 99.0 Highly correlated
16 ZNF320 3 28.9 Weakly correlated
17 ZNF780B 2 74.0 Weakly correlated
18 ZNF483 2 99.0 Highly correlated
19 ZNF133 2 99.0 Highly correlated
20 ZKSCAN5 2 160.0 Weakly correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZNF317 2 99.0 Highly correlated
23 ZNF251 2 94.0 Moderately correlated
24 ZNF534 2 19.6 Weakly correlated
25 ZNF75D 2 94.0 Moderately correlated
26 ZFP69B 1 99.0 Highly correlated
27 ZNF28 1 28.9 Weakly correlated
28 ZNF735 1 28.9 Weakly correlated
29 ZNF331 1 94.0 Moderately correlated
30 ZNF485 1 94.0 Moderately correlated
31 ZNF350 1 99.0 Highly correlated
32 ZNF175 1 94.0 Moderately correlated
33 ZNF701 1 28.9 Weakly correlated
34 ZNF671 1 94.0 Moderately correlated
35 ZFP37 1 99.0 Highly correlated
36 ZNF490 1 43.0 Weakly correlated
37 ZNF189 1 99.0 Highly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF816 1 28.9 Weakly correlated
40 ZNF723 1 15.2 Weakly correlated
41 ZNF679 1 28.9 Weakly correlated
42 ZNF44 1 43.0 Weakly correlated
43 ZNF324 1 99.0 Highly correlated
44 ZNF506 1 28.9 Weakly correlated
45 ZNF468 1 28.9 Weakly correlated
46 ZNF589 1 28.9 Weakly correlated
47 ZNF197 1 99.0 Highly correlated
48 ZNF891 1 99.0 Highly correlated
49 ZNF26 1 99.0 Highly correlated
50 ZNF124 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF33B 99.0 Highly correlated
3 ZNF566 99.0 Highly correlated