ZRdb KZFP & Repeats
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LTR_LTR66

  • Name
    LTR66
  • Repbase
    LTR66
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000565
Description :

LTR66 is a long terminal repeat from primate-specific HERVL66 endogenousretrovirus. LTR66 solo elements are flanked by 5 bp TSDs. Orientationhas been revised from original after further analysis of the associatedHERVL66 internal region.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggaggaaaagttaaatattaaatttgaactcaattgaacgtggacacaaacaatggtcaccaagtcccggaacaggttgtgtgagccccttgaggcgttcatccagcgctgtttcggagaaatctctatttcaatctattcctatacgttagttattgaaaaacaatagacaatcgcaaaaacaagttgacctttttgtgttccttgagcccagtcgcgaagggccctcgtgactgggcctcatgccaaacaactcgttacaaaaagagctagggtcccagaccgcgccgaagcttcatgagacctctcctcgtctgtgcacggacgagtggccgactctggagcccaggctgttgcttcccggtctggtggtgaatcctccatagtctggtgagtgtaaatatatatatatatatatatntnnatatatatatatcttttcccttctccccttcccattgcaatttgcttattatatcaatttgcttattatatcatttgcttattatatctgcattgccatttacgtgggataaaggttgtttacccttaaaggtattgtgtgtgtgtcttttcttctcccctcgcgcgtttcccgcacagaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 9 99.0 Weakly correlated
2 ZNF317 5 99.0 Weakly correlated
3 ZNF793 4 99.0 Weakly correlated
4 ZNF597 3 94.0 Weakly correlated
5 ZNF75D 2 94.0 Weakly correlated
6 ZNF263 2 180.0 Weakly correlated
7 ZNF28 2 28.9 Moderately correlated
8 ZNF679 2 28.9 Moderately correlated
9 ZNF320 2 28.9 Moderately correlated
10 ZNF140 2 99.0 Weakly correlated
11 ZNF479 2 6.4 Weakly correlated
12 ZNF558 2 99.0 Weakly correlated
13 ZNF429 1 28.9 Moderately correlated
14 ZFP69B 1 99.0 Weakly correlated
15 ZNF735 1 28.9 Moderately correlated
16 ZNF701 1 28.9 Moderately correlated
17 ZNF641 1 99.0 Weakly correlated
18 ZNF506 1 28.9 Moderately correlated
19 ZNF394 1 99.0 Weakly correlated
20 ZKSCAN1 1 160.0 Weakly correlated
21 ZNF101 1 43.0 Highly correlated
22 ZNF2 1 99.0 Weakly correlated
23 ZNF251 1 94.0 Weakly correlated
24 ZNF19 1 99.0 Weakly correlated
25 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF317 3 99.0 Weakly correlated
2 ZNF75D 1 94.0 Weakly correlated
3 ZNF793 1 99.0 Weakly correlated
4 ZNF597 1 94.0 Weakly correlated
5 ZNF701 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats