ZRdb KZFP & Repeats
...

LTR_LTR65

  • Name
    LTR65
  • Repbase
    LTR65
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000564
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaaagtaaaaatctgccctgccattcatcaggctgggataacagacacagataaagccagctgcaaagtntaacaggaaacaatatttctcccaaggacacgctgcagctgtaaagtgtcataacgaccctccttctttgagtgactactgctttcttactcactgagaaaccttgttctctaaaatcatagactatcagaaactttgctgtttgaaattatatcagtaagaatgaaacatcccactcttgcctggaggatctaagtcactttgacacagagaagcagcctcgatttccaacccaggtgcagagcttcagataaggggtttctggacacaacattccacatctatcttaactttgtagtttccaaggaaacaggaccctgggtccacttcgcagtccaggacctgatgttgacccctttacacacagccctgctttgctttgagcctatcannnncgaaacactgcttcatttaaatttcacctaaactccacccttcccccaaatcctataataactctatcttttcctttgtttggtgagacgccccacggttcctctggtgtgcggtctccctcgttgcaacgagtcaataaacctgactttgtcggactacaggtttgtccctggtggtcttaggctgattgggctaggaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 33 43.0 Weakly correlated
2 ZNF382 29 99.0 Highly correlated
3 ZNF2 19 99.0 Highly correlated
4 ZNF394 17 99.0 Highly correlated
5 ZNF18 17 160.0 Weakly correlated
6 ZFP37 14 99.0 Highly correlated
7 ZNF589 13 28.9 Weakly correlated
8 ZNF175 11 94.0 Moderately correlated
9 ZNF263 10 180.0 Weakly correlated
10 ZNF324 9 99.0 Highly correlated
11 ZNF197 8 99.0 Highly correlated
12 ZNF558 8 99.0 Highly correlated
13 ZNF101 8 43.0 Weakly correlated
14 ZNF584 7 99.0 Highly correlated
15 ZFP69B 7 99.0 Highly correlated
16 ZKSCAN8 6 160.0 Weakly correlated
17 ZNF257 5 0.0 Weakly correlated
18 ZKSCAN1 5 160.0 Weakly correlated
19 ZNF610 5 28.9 Weakly correlated
20 ZNF680 4 28.9 Weakly correlated
21 ZNF554 4 99.0 Highly correlated
22 ZNF479 4 6.4 Weakly correlated
23 ZNF701 4 28.9 Weakly correlated
24 ZNF792 3 94.0 Moderately correlated
25 ZNF679 3 28.9 Weakly correlated
26 ZNF320 3 28.9 Weakly correlated
27 ZNF317 3 99.0 Highly correlated
28 ZNF75D 3 94.0 Moderately correlated
29 ZNF274 3 99.0 Highly correlated
30 ZNF264 3 99.0 Highly correlated
31 ZIM3 3 87.0 Moderately correlated
32 ZNF441 2 43.0 Weakly correlated
33 ZNF519 2 19.6 Weakly correlated
34 ZNF723 2 15.2 Weakly correlated
35 ZNF705D 2 28.9 Weakly correlated
36 ZNF705B 2 28.9 Weakly correlated
37 ZNF641 2 99.0 Highly correlated
38 ZNF490 1 43.0 Weakly correlated
39 ZNF92 1 28.9 Weakly correlated
40 ZNF8 1 99.0 Highly correlated
41 ZNF85 1 28.9 Weakly correlated
42 ZNF716 1 19.6 Weakly correlated
43 ZNF793 1 99.0 Highly correlated
44 ZNF778 1 74.0 Weakly correlated
45 ZNF674 1 99.0 Highly correlated
46 ZNF671 1 94.0 Moderately correlated
47 ZNF578 1 15.2 Weakly correlated
48 ZNF547 1 74.0 Weakly correlated
49 ZNF534 1 19.6 Weakly correlated
50 ZNF528 1 43.0 Weakly correlated
51 ZNF429 1 28.9 Weakly correlated
52 ZNF425 1 94.0 Moderately correlated
53 ZNF420 1 94.0 Moderately correlated
54 ZNF383 1 99.0 Highly correlated
55 ZNF141 1 43.0 Weakly correlated
56 ZNF140 1 99.0 Highly correlated
57 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 7 43.0 Weakly correlated
2 ZNF175 4 94.0 Moderately correlated
3 ZNF584 3 99.0 Highly correlated
4 ZNF589 3 28.9 Weakly correlated
5 ZNF75D 2 94.0 Moderately correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF705B 1 28.9 Weakly correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF558 1 99.0 Highly correlated
10 ZNF674 1 99.0 Highly correlated
11 ZNF382 1 99.0 Highly correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF197 1 99.0 Highly correlated
14 ZNF479 1 6.4 Weakly correlated
15 ZNF101 1 43.0 Weakly correlated
16 ZNF257 1 0.0 Weakly correlated
17 ZNF701 1 28.9 Weakly correlated
18 ZNF141 1 43.0 Weakly correlated
19 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats