ZRdb KZFP & Repeats
...

LTR_LTR64

  • Name
    LTR64
  • Repbase
    LTR64
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000563
Description :

4 bp TSDs.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgagacaaagtagcaaacgtaagaagccatgtttgctcatttctgcttgccagcataatttcacaaagcccctgactctgtgacgacgtgcagctctccggaaagatgctttgaagacaaaacaggatagagcacacggccccccacgtctcttgcctgagtcactatattccttaaaagataaatgaccctagtccttgccttttcctacacataagataacgtctgacggggttagtgattatgcctctgtaatctataaccagatgtactcttacacccaaaccttgatgtgattctgctttaatgtaacttctgagcaagtttgatgtgattttgcacgtactgaacctccaccacctgtatataagcngtgggctgaaacactgcgccggagcagtctgacagaacctctctgaagggctgctcccgggctgtaggcctcggtctatagtcctcagtaagacttctgaataaaactaactttaattctttaaaagcttgatttttttttctttagtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 28 99.0 Weakly correlated
2 ZNF766 13 43.0 Weakly correlated
3 ZFP37 11 99.0 Weakly correlated
4 ZNF263 10 180.0 Weakly correlated
5 ZNF175 10 94.0 Weakly correlated
6 ZNF589 10 28.9 Weakly correlated
7 ZNF394 9 99.0 Weakly correlated
8 ZNF584 7 99.0 Weakly correlated
9 ZKSCAN1 6 160.0 Weakly correlated
10 ZNF18 6 160.0 Weakly correlated
11 ZNF2 6 99.0 Weakly correlated
12 ZKSCAN8 5 160.0 Weakly correlated
13 ZNF197 5 99.0 Weakly correlated
14 ZFP69B 5 99.0 Weakly correlated
15 ZNF679 4 28.9 Weakly correlated
16 ZNF101 3 43.0 Weakly correlated
17 ZNF554 3 99.0 Weakly correlated
18 ZNF534 3 19.6 Weakly correlated
19 ZNF479 3 6.4 Weakly correlated
20 ZNF701 2 28.9 Weakly correlated
21 ZNF440 2 28.9 Weakly correlated
22 ZNF641 2 99.0 Weakly correlated
23 ZNF429 2 28.9 Weakly correlated
24 ZNF324 2 99.0 Weakly correlated
25 ZNF320 2 28.9 Weakly correlated
26 ZNF28 2 28.9 Weakly correlated
27 ZNF705B 1 28.9 Weakly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF680 1 28.9 Weakly correlated
30 ZNF723 1 15.2 Weakly correlated
31 ZNF735 1 28.9 Weakly correlated
32 ZNF777 1 319.0 Weakly correlated
33 ZNF793 1 99.0 Weakly correlated
34 ZNF675 1 8.6 Weakly correlated
35 ZNF823 1 43.0 Weakly correlated
36 ZNF610 1 28.9 Weakly correlated
37 ZNF597 1 94.0 Weakly correlated
38 ZNF547 1 74.0 Highly correlated
39 ZNF530 1 28.9 Weakly correlated
40 ZNF44 1 43.0 Weakly correlated
41 ZNF30 1 94.0 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF251 1 94.0 Weakly correlated
44 ZNF169 1 94.0 Weakly correlated
45 ZNF133 1 99.0 Weakly correlated
46 ZIM3 1 87.0 Weakly correlated
47 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP37 3 99.0 Weakly correlated
2 ZNF766 3 43.0 Weakly correlated
3 ZNF589 3 28.9 Weakly correlated
4 ZNF101 2 43.0 Weakly correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF197 2 99.0 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF584 2 99.0 Weakly correlated
9 ZNF554 2 99.0 Weakly correlated
10 ZNF705D 1 28.9 Weakly correlated
11 ZNF530 1 28.9 Weakly correlated
12 ZNF28 1 28.9 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF18 1 160.0 Weakly correlated
15 ZNF251 1 94.0 Weakly correlated
16 ZNF394 1 99.0 Weakly correlated
17 ZNF440 1 28.9 Weakly correlated
18 ZNF44 1 43.0 Weakly correlated
19 ZNF705B 1 28.9 Weakly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF263 1 180.0 Weakly correlated
22 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats