ZRdb KZFP & Repeats
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LTR_LTR62

  • Name
    LTR62
  • Repbase
    LTR62
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000562
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtatagagcacccttgacataagtaactccatcttagaaaaagactccatcttacatttcanagggcactttgccaacagggacnagatgttttgcctaatcaataaagactgcatccaaccagataaggacataancaagcacactcttccactatcagtcctcaccagaggactctgtggccataaaaagagcaggacttcagcagctcgaaacggccgtcttaacngacaccgtcttgctgtcactcgtgataagcacccggcatctgccgccgaaggctctgcccacatcaaagactcttccttgcaagaccgacggaccgcccggnccagaccaggacattctttttgtctncgtcgctctccctggactggttcgttaaccctttttcctatcccttttctcttgatgttaaatgttactttgtttgttgtggaatgtttaatctataacatttatatattgattaagtatactattatgtatggtttgcaatattgactgacttgtggagtggcttgagcctgtgtgcccgcggctctgactaccgagtgaacgggaagtactaaggagaattgcctccttgggaactccatgtagctcgtggcttttgtgattgaaatagcatcaataaaagtctgacattgtggaaagacacaaacgtgcgtggacctggttatctctgaccttgcgccgctcatgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 101 43.0 Weakly correlated
2 ZNF175 95 94.0 Weakly correlated
3 ZNF589 85 28.9 Weakly correlated
4 ZNF197 82 99.0 Weakly correlated
5 ZKSCAN8 76 160.0 Weakly correlated
6 ZNF584 74 99.0 Weakly correlated
7 ZKSCAN1 16 160.0 Weakly correlated
8 ZNF274 16 99.0 Weakly correlated
9 ZNF382 14 99.0 Weakly correlated
10 ZNF563 14 28.9 Weakly correlated
11 ZNF18 13 160.0 Weakly correlated
12 ZNF394 8 99.0 Weakly correlated
13 ZNF263 7 180.0 Weakly correlated
14 ZNF2 6 99.0 Weakly correlated
15 ZFP37 4 99.0 Weakly correlated
16 ZNF317 4 99.0 Weakly correlated
17 ZNF597 4 94.0 Weakly correlated
18 ZNF101 4 43.0 Weakly correlated
19 ZFP69B 4 99.0 Weakly correlated
20 ZNF610 3 28.9 Weakly correlated
21 ZNF324 3 99.0 Weakly correlated
22 ZNF331 3 94.0 Weakly correlated
23 ZNF558 3 99.0 Weakly correlated
24 ZNF547 3 74.0 Highly correlated
25 ZNF682 2 28.9 Weakly correlated
26 ZNF723 2 15.2 Weakly correlated
27 ZNF554 2 99.0 Weakly correlated
28 ZFP57 2 87.0 Weakly correlated
29 ZNF534 2 19.6 Weakly correlated
30 ZNF429 2 28.9 Weakly correlated
31 ZNF347 2 43.0 Weakly correlated
32 ZIM3 2 87.0 Weakly correlated
33 ZNF486 2 8.6 Weakly correlated
34 ZNF613 1 99.0 Weakly correlated
35 ZNF793 1 99.0 Weakly correlated
36 ZNF778 1 74.0 Highly correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZNF705D 1 28.9 Weakly correlated
39 ZNF705B 1 28.9 Weakly correlated
40 ZNF701 1 28.9 Weakly correlated
41 ZNF141 1 43.0 Weakly correlated
42 ZNF680 1 28.9 Weakly correlated
43 ZNF251 1 94.0 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF264 1 99.0 Weakly correlated
46 ZNF28 1 28.9 Weakly correlated
47 ZNF334 1 99.0 Weakly correlated
48 ZNF337 1 43.0 Weakly correlated
49 ZNF471 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 35 94.0 Weakly correlated
2 ZNF589 34 28.9 Weakly correlated
3 ZNF197 32 99.0 Weakly correlated
4 ZNF584 27 99.0 Weakly correlated
5 ZNF263 3 180.0 Weakly correlated
6 ZIM3 2 87.0 Weakly correlated
7 ZNF723 2 15.2 Weakly correlated
8 ZNF18 2 160.0 Weakly correlated
9 ZKSCAN8 1 160.0 Weakly correlated
10 ZNF101 1 43.0 Weakly correlated
11 ZNF141 1 43.0 Weakly correlated
12 ZNF558 1 99.0 Weakly correlated
13 ZNF471 1 94.0 Weakly correlated
14 ZNF274 1 99.0 Weakly correlated
15 ZNF701 1 28.9 Weakly correlated
16 ZNF331 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Weakly correlated