ZRdb KZFP & Repeats
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LTR_LTR61

  • Name
    LTR61
  • Repbase
    LTR61
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000561
Description :

LTR61 has 4 bp TSD.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcagaaatttaaaaataaatatgcattcattcactccaagaaaagtaacaggcaaggcaagggttaaaaagaaaagaacaagttttcctctgcctagcnaagctcacttcaaggacagttataagataacgctgtccgagaagccaaggccaaaggaatgggctccagacacccccccncctccagagcaaggttgaaggaaaaaaagagaaagacaaattcttttactgttactcctttcccnggcttcttaagcatgattatgttttacaaatgtctgtatttagccagttcttgtttttctttcgacgcagctacaaggccaccagctatgcaaggccacaagttatgctatgctatagattacgtgacctgtcactgtatgattaactgcttttgttttgcttctgtaagnccgcttataaaaaccccgctctgtctttgttcaatgctcagctttttggatgtgaatccactgagccggtgcgtacctaaaataaacaatcctcctgtactccccatatcggtctctccggtcctcagtttcccgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF845 22 28.9 Moderately correlated
2 ZNF394 8 99.0 Weakly correlated
3 ZNF554 7 99.0 Weakly correlated
4 ZNF766 7 43.0 Highly correlated
5 ZNF382 7 99.0 Weakly correlated
6 ZNF680 6 28.9 Moderately correlated
7 ZNF2 4 99.0 Weakly correlated
8 ZNF558 3 99.0 Weakly correlated
9 ZFP37 3 99.0 Weakly correlated
10 ZNF175 3 94.0 Weakly correlated
11 ZNF263 3 180.0 Weakly correlated
12 ZNF324 2 99.0 Weakly correlated
13 ZNF589 2 28.9 Moderately correlated
14 ZNF679 2 28.9 Moderately correlated
15 ZNF528 2 43.0 Highly correlated
16 ZNF320 2 28.9 Moderately correlated
17 ZNF251 2 94.0 Weakly correlated
18 ZNF197 2 99.0 Weakly correlated
19 ZNF792 2 94.0 Weakly correlated
20 ZNF816 2 28.9 Moderately correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZFP69B 2 99.0 Weakly correlated
23 ZNF92 1 28.9 Moderately correlated
24 ZNF778 1 74.0 Weakly correlated
25 ZNF786 1 99.0 Weakly correlated
26 ZNF705B 1 28.9 Moderately correlated
27 ZNF701 1 28.9 Moderately correlated
28 ZNF641 1 99.0 Weakly correlated
29 ZNF597 1 94.0 Weakly correlated
30 ZNF585B 1 99.0 Weakly correlated
31 ZNF584 1 99.0 Weakly correlated
32 ZNF547 1 74.0 Weakly correlated
33 ZNF490 1 43.0 Highly correlated
34 ZNF441 1 43.0 Highly correlated
35 ZNF440 1 28.9 Moderately correlated
36 ZNF432 1 99.0 Weakly correlated
37 ZNF429 1 28.9 Moderately correlated
38 ZNF28 1 28.9 Moderately correlated
39 ZNF17 1 69.0 Weakly correlated
40 ZNF124 1 43.0 Highly correlated
41 ZNF101 1 43.0 Highly correlated
42 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 1 43.0 Highly correlated
2 ZNF845 1 28.9 Moderately correlated
3 ZNF197 1 99.0 Weakly correlated
4 ZNF251 1 94.0 Weakly correlated
5 ZNF701 1 28.9 Moderately correlated
6 ZNF440 1 28.9 Moderately correlated
7 ZNF584 1 99.0 Weakly correlated
8 ZNF28 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats