ZRdb KZFP & Repeats
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LTR_LTR60B

  • Name
    LTR60B
  • Repbase
    LTR60B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000560
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagagtaggcagatagctagacatgagcaggagggggagcccctgagaaaaggaggtctggaaaatctcacacncccagagaccacccgaaacatgcatgctagccgcgcgncgnnncgnncgcgcgnnnnnncgnatatgagcagagaggaggggaaatacctatgcagaaaggaacgccccttaagacgcccagtaatcgctcactctgcagttaacctgtcagaatgtagctagctacatgctgataaggaggaaagagggcaaaggagaaattcctaagagatacgcaggcgcaataagtacagatttgaccgctatacgaccttcctggggtggcggtaatgagcaacgcngccattaggtagaattcgtatccaacaccgggcccgcgcatgcgcaccaactgacagtaagggagggtcccacaagcctggggcgggaactaggcgggganaaggcggggacttaagaaaaaactagacaaagaaaaaaggcggagcttaagacagaggcgggaacttcaagaaaaagtccgacatnataaaaaccccaacgcagaactctcggggctgctgctggctcactctctttcagcagcccgctctgcctcatctttcagagtgtactgtctctttaaataaactctctgctctctattttccttcaataaattctcttttatggctaaattgtctcttggccgaattctttctcccaagtaagactaagaaccgaggattcccgcacttcccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 13 43.0 Weakly correlated
2 ZNF382 12 99.0 Weakly correlated
3 ZNF394 7 99.0 Weakly correlated
4 ZNF2 5 99.0 Weakly correlated
5 ZNF680 5 28.9 Weakly correlated
6 ZNF610 4 28.9 Weakly correlated
7 ZNF18 4 160.0 Weakly correlated
8 ZNF324 4 99.0 Weakly correlated
9 ZNF263 4 180.0 Weakly correlated
10 ZNF534 3 19.6 Weakly correlated
11 ZNF597 3 94.0 Weakly correlated
12 ZNF823 2 43.0 Weakly correlated
13 ZNF585A 2 99.0 Weakly correlated
14 ZNF479 2 6.4 Weakly correlated
15 ZFP37 2 99.0 Weakly correlated
16 ZNF197 2 99.0 Weakly correlated
17 ZNF175 2 94.0 Weakly correlated
18 ZNF705B 2 28.9 Weakly correlated
19 ZKSCAN8 2 160.0 Weakly correlated
20 ZKSCAN1 2 160.0 Weakly correlated
21 ZNF792 2 94.0 Weakly correlated
22 ZNF701 1 28.9 Weakly correlated
23 ZNF679 1 28.9 Weakly correlated
24 ZNF705D 1 28.9 Weakly correlated
25 ZNF585B 1 99.0 Weakly correlated
26 ZNF471 1 94.0 Weakly correlated
27 ZNF584 1 99.0 Weakly correlated
28 ZNF558 1 99.0 Weakly correlated
29 ZNF554 1 99.0 Weakly correlated
30 ZNF547 1 74.0 Highly correlated
31 ZNF528 1 43.0 Weakly correlated
32 ZNF441 1 43.0 Weakly correlated
33 ZNF347 1 43.0 Weakly correlated
34 ZNF320 1 28.9 Weakly correlated
35 ZNF202 1 160.0 Weakly correlated
36 ZNF141 1 43.0 Weakly correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZIM3 1 87.0 Weakly correlated
39 ZFP69B 1 99.0 Weakly correlated
40 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585A 2 99.0 Weakly correlated
2 ZNF534 2 19.6 Weakly correlated
3 ZNF263 2 180.0 Weakly correlated
4 ZNF680 2 28.9 Weakly correlated
5 ZNF597 2 94.0 Weakly correlated
6 ZNF175 1 94.0 Weakly correlated
7 ZNF823 1 43.0 Weakly correlated
8 ZNF584 1 99.0 Weakly correlated
9 ZNF320 1 28.9 Weakly correlated
10 ZNF766 1 43.0 Weakly correlated
11 ZNF347 1 43.0 Weakly correlated
12 ZFP57 1 87.0 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF197 1 99.0 Weakly correlated
15 ZNF554 1 99.0 Weakly correlated
16 ZNF18 1 160.0 Weakly correlated
17 ZNF202 1 160.0 Weakly correlated
18 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats