ZRdb KZFP & Repeats
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LTR_LTR60

  • Name
    LTR60
  • Repbase
    LTR60
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000559
Description :

5' similar to MER50 and 3' similar to TAR1. Possible involvement inevolution of telomere-associated repeats.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagagtaggcagatagccaganatgagcaggagagggagcccctgggaaaaggaaggtctggaaaatctcacaccccagggaccacccgaaacangcatgctagatatgagcagagaggaggggaaatacctaggcagaaaggaacgcccnttaagacgcccagtaatcattcactctgcagttancctgtcagaatgtagctagatacatgctgataagggaagagggcaaaggagaaattcctaagagatacgcaggtgcaataagcacagatttaaccactatacgaccttcctggggtggcagtaatgagcaatgcagccattaggtagaattcatatcnaacaccgggcccncgcgtncgtatcaactagcagtaagggaggntcccacaagcctgggcgggaantangtggggaaangcagggacttaaggcgnaagcaggaaaactaganaangaaaaaggtggagacttaaaacagaggtgggaactccaagaaaaatgcaatatcataaaaactcagtgcacattctcgggnnnnccgctggctcattctctatcagcagcccgctctgcctta
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Weakly correlated
2 ZNF274 4 99.0 Weakly correlated
3 ZNF766 4 43.0 Highly correlated
4 ZFP37 2 99.0 Weakly correlated
5 ZNF197 2 99.0 Weakly correlated
6 ZNF2 2 99.0 Weakly correlated
7 ZNF324 2 99.0 Weakly correlated
8 ZNF394 2 99.0 Weakly correlated
9 ZKSCAN1 1 160.0 Weakly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF317 1 99.0 Weakly correlated
12 ZNF554 1 99.0 Weakly correlated
13 ZNF558 1 99.0 Weakly correlated
14 ZNF679 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats