ZRdb KZFP & Repeats
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LTR_LTR5_HS

  • Name
    LTR5_HS
  • Repbase
    LTR5_Hs
  • Type
    LTR
  • Emergence
    0.0 Mya
  • Dfam Id
    DF0000558
Description :

A HERVK LTR (youngest subfamily < 1% div).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggggaaaagcaagagagatcagattgttactgtgtctgtgtagaaagaagtagacataggagactccattttgttctgtactaagaaaaattcttctgccttgagattctgttaatctataaccttacccccaaccccgtgctctctgaaacatgtgctgtgtcaactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctccttaagagtcatcaccactccctaatctcaagtacccagggacacaaaaactgcggaaggccgcagggacctctgcctaggaaagccaggtattgtccaaggtttctccccatgtgatagtctgaaatatggcctcgtgggaagggaaagacctgaccgtcccccagcccgacacccgtaaagggtctgtgctgaggaggattagtaaaagaggaaggaatgcctcttgcagttgagacaagaggaaggcatctgtctcctgcccgtccctgggcaatggaatgtctcggtataaaacccgattgtatgttccatctactgagatagggaaaaaccgccttagggctggaggtgggacatgcgggcagcaatactgctttgtaaagcattgagatgtttatgtgtatgcatatctaaaagcacagcacttaatcctttaccttgtctatgatgcaaagacctttgttcacgtgtttgtctgctgaccctctccccacnattgtcttgtgaccctgacacatccccctctccgagaaacacccacgaatgatcaataaatactaagggaactcagaggctggcgggatcctccatatgctgaacgctggttccccgggtccccttatttctttctctatactttgtctctgtgtctttttcttttccaagtctctcgttccacctnacgagaaacacccacaggtgtggaggggcaacccaccccttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 97 43.0 Weakly correlated
2 ZNF382 63 99.0 Weakly correlated
3 ZNF175 62 94.0 Weakly correlated
4 ZNF589 58 28.9 Weakly correlated
5 ZNF584 51 99.0 Weakly correlated
6 ZKSCAN8 49 160.0 Weakly correlated
7 ZNF197 45 99.0 Weakly correlated
8 ZNF69 32 28.9 Weakly correlated
9 ZNF320 29 28.9 Weakly correlated
10 ZFP37 26 99.0 Weakly correlated
11 ZNF2 20 99.0 Weakly correlated
12 ZNF394 19 99.0 Weakly correlated
13 ZNF18 19 160.0 Weakly correlated
14 ZNF610 15 28.9 Weakly correlated
15 ZFP69B 13 99.0 Weakly correlated
16 ZNF274 12 99.0 Weakly correlated
17 ZNF28 11 28.9 Weakly correlated
18 ZKSCAN1 11 160.0 Weakly correlated
19 ZNF425 10 94.0 Weakly correlated
20 ZNF417 9 28.9 Weakly correlated
21 ZNF587 9 28.9 Weakly correlated
22 ZNF92 9 28.9 Weakly correlated
23 ZNF101 8 43.0 Weakly correlated
24 ZNF554 6 99.0 Weakly correlated
25 ZNF679 6 28.9 Weakly correlated
26 ZNF479 6 6.4 Weakly correlated
27 ZFP57 5 87.0 Weakly correlated
28 ZNF324 5 99.0 Weakly correlated
29 ZNF528 5 43.0 Weakly correlated
30 ZNF519 5 19.6 Weakly correlated
31 ZNF263 3 180.0 Weakly correlated
32 ZNF558 2 99.0 Weakly correlated
33 ZNF845 2 28.9 Weakly correlated
34 ZNF705D 2 28.9 Weakly correlated
35 ZNF705B 2 28.9 Weakly correlated
36 ZNF701 2 28.9 Weakly correlated
37 ZKSCAN5 2 160.0 Weakly correlated
38 ZNF695 2 28.9 Weakly correlated
39 ZNF141 2 43.0 Weakly correlated
40 ZNF202 2 160.0 Weakly correlated
41 ZNF230 2 28.9 Weakly correlated
42 ZNF486 2 8.6 Weakly correlated
43 ZNF317 2 99.0 Weakly correlated
44 ZNF251 2 94.0 Weakly correlated
45 ZNF440 2 28.9 Weakly correlated
46 ZNF331 2 94.0 Weakly correlated
47 ZNF468 2 28.9 Weakly correlated
48 ZNF347 1 43.0 Weakly correlated
49 ZNF674 1 99.0 Weakly correlated
50 ZNF624 1 99.0 Weakly correlated
51 ZNF680 1 28.9 Weakly correlated
52 ZNF682 1 28.9 Weakly correlated
53 ZNF420 1 94.0 Weakly correlated
54 ZNF253 1 19.6 Weakly correlated
55 ZNF257 1 0.0 Highly correlated
56 ZNF705A 1 28.9 Weakly correlated
57 ZNF792 1 94.0 Weakly correlated
58 ZNF91 1 6.0 Weakly correlated
59 ZNF878 1 43.0 Weakly correlated
60 ZNF723 1 15.2 Weakly correlated
61 ZIM3 1 87.0 Weakly correlated
62 ZNF778 1 74.0 Weakly correlated
63 ZNF789 1 99.0 Weakly correlated
64 ZNF284 1 43.0 Weakly correlated
65 ZNF547 1 74.0 Weakly correlated
66 ZNF480 1 43.0 Weakly correlated
67 ZNF485 1 94.0 Weakly correlated
68 ZNF471 1 94.0 Weakly correlated
69 ZNF490 1 43.0 Weakly correlated
70 ZNF510 1 99.0 Weakly correlated
71 ZNF445 1 99.0 Weakly correlated
72 ZNF534 1 19.6 Weakly correlated
73 ZNF543 1 99.0 Weakly correlated
74 ZNF544 1 0.0 Highly correlated
75 ZNF66 1 0.0 Highly correlated
76 ZNF287 1 99.0 Weakly correlated
77 ZNF560 1 43.0 Weakly correlated
78 ZNF43 1 43.0 Weakly correlated
79 ZNF585A 1 99.0 Weakly correlated
80 ZNF177 1 94.0 Weakly correlated
81 ZNF157 1 99.0 Weakly correlated
82 ZNF14 1 69.0 Weakly correlated
83 ZNF616 1 43.0 Weakly correlated
84 ZNF248 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF69 27 28.9 Weakly correlated
2 ZNF766 23 43.0 Weakly correlated
3 ZNF320 15 28.9 Weakly correlated
4 ZNF197 10 99.0 Weakly correlated
5 ZNF589 9 28.9 Weakly correlated
6 ZNF417 7 28.9 Weakly correlated
7 ZNF175 6 94.0 Weakly correlated
8 ZNF584 5 99.0 Weakly correlated
9 ZNF28 4 28.9 Weakly correlated
10 ZFP57 3 87.0 Weakly correlated
11 ZNF92 2 28.9 Weakly correlated
12 ZNF479 2 6.4 Weakly correlated
13 ZNF554 1 99.0 Weakly correlated
14 ZNF558 1 99.0 Weakly correlated
15 ZFP37 1 99.0 Weakly correlated
16 ZNF230 1 28.9 Weakly correlated
17 ZNF263 1 180.0 Weakly correlated
18 ZNF471 1 94.0 Weakly correlated
19 ZNF317 1 99.0 Weakly correlated
20 ZNF480 1 43.0 Weakly correlated
21 ZNF534 1 19.6 Weakly correlated
22 ZNF257 1 0.0 Highly correlated
23 ZNF101 1 43.0 Weakly correlated
24 ZNF723 1 15.2 Weakly correlated
25 ZNF420 1 94.0 Weakly correlated
26 ZNF610 1 28.9 Weakly correlated
27 ZKSCAN5 1 160.0 Weakly correlated
28 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF589 28.9 Weakly correlated
4 ZNF766 43.0 Weakly correlated