ZRdb KZFP & Repeats
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LTR_LTR5B

  • Name
    LTR5B
  • Repbase
    LTR5B
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000557
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggggaaaagaaagagagatcagactgttactgtgtctatgtagaaaaggaagacataagaaactccattttgatctgtaccangaaaaattgcttctgccttgagatgctgttaatctgtaactttagccccaaccctgtgctcacagaaacatgtgctgtatngaatcaaggtttaagggatctagggctgtgcaggatgtgccttgttaacaanatgtttgcaggcagtatgcttggtaaaagtcatcgccattctccantctcgattaaccaggggcacaatgcactgcggaaagccgcagggacctctgcccaggaaagccgggtattgtccaaggtttctccccatgagacagcctgagatatggcctcgtgggaagggaaagacctgaccgtccncccagcccgacacccgtaaagggtctgtgctgaggaggattagtgaaagaggaaggcctcttgcagttgagataagaggaaggcctctgtctcctgcccgtccctgggaacggaatgtctcggtgtaaaacccgatcgtacattcgttcnattctgagataggagaaaanccgccctgtggctggaggcgagacatgctggcggcaatgctgctctgttactctttactncactgagatgtttgggtggagagaaacataaatctggcctacgtgcacatccaggcacagtaccttcccttgaacttatttatgacacagattcctttgctcacatgttttcctgctgaccttctccccactatcaccctgttctcctgccgcattcccctcgccgagatagtgaaaatagtgatcaataaatactgagggaactcagagaccggtgccggtgcgggtcctccgtatgctgagcgccggtcccctgggcccactgttctttctctatactttgtctctgtgtcttatttcttttctcagtctctcgtcccacctgacgagaaatacccacaggtgtggaggggcnggccgncccttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 90 43.0 Weakly correlated
2 ZNF175 31 94.0 Weakly correlated
3 ZNF197 29 99.0 Weakly correlated
4 ZNF589 27 28.9 Highly correlated
5 ZNF584 18 99.0 Weakly correlated
6 ZNF382 17 99.0 Weakly correlated
7 ZKSCAN8 17 160.0 Weakly correlated
8 ZNF587 15 28.9 Highly correlated
9 ZNF320 14 28.9 Highly correlated
10 ZNF263 11 180.0 Weakly correlated
11 ZNF417 11 28.9 Highly correlated
12 ZKSCAN1 9 160.0 Weakly correlated
13 ZNF18 9 160.0 Weakly correlated
14 ZNF92 8 28.9 Highly correlated
15 ZNF274 8 99.0 Weakly correlated
16 ZNF69 6 28.9 Highly correlated
17 ZNF440 6 28.9 Highly correlated
18 ZFP57 6 87.0 Weakly correlated
19 ZNF251 6 94.0 Weakly correlated
20 ZNF597 5 94.0 Weakly correlated
21 ZNF723 5 15.2 Moderately correlated
22 ZKSCAN5 3 160.0 Weakly correlated
23 ZNF101 3 43.0 Weakly correlated
24 ZNF585A 3 99.0 Weakly correlated
25 ZNF140 3 99.0 Weakly correlated
26 ZNF394 3 99.0 Weakly correlated
27 ZFP37 3 99.0 Weakly correlated
28 ZNF257 3 0.0 Weakly correlated
29 ZNF707 3 74.0 Weakly correlated
30 ZNF2 2 99.0 Weakly correlated
31 ZNF530 2 28.9 Highly correlated
32 ZIM3 2 87.0 Weakly correlated
33 ZNF490 2 43.0 Weakly correlated
34 ZNF485 2 94.0 Weakly correlated
35 ZNF479 2 6.4 Weakly correlated
36 ZNF28 2 28.9 Highly correlated
37 ZNF141 2 43.0 Weakly correlated
38 ZNF324 2 99.0 Weakly correlated
39 ZNF317 2 99.0 Weakly correlated
40 ZFP69B 1 99.0 Weakly correlated
41 ZNF776 1 43.0 Weakly correlated
42 ZNF680 1 28.9 Highly correlated
43 ZNF677 1 99.0 Weakly correlated
44 ZNF816 1 28.9 Highly correlated
45 ZNF84 1 99.0 Weakly correlated
46 ZNF519 1 19.6 Moderately correlated
47 ZNF641 1 99.0 Weakly correlated
48 ZNF554 1 99.0 Weakly correlated
49 ZNF534 1 19.6 Moderately correlated
50 ZNF506 1 28.9 Highly correlated
51 ZNF486 1 8.6 Weakly correlated
52 ZNF44 1 43.0 Weakly correlated
53 ZNF445 1 99.0 Weakly correlated
54 ZNF441 1 43.0 Weakly correlated
55 ZNF17 1 69.0 Weakly correlated
56 ZNF334 1 99.0 Weakly correlated
57 ZNF284 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 20 43.0 Weakly correlated
2 ZNF197 9 99.0 Weakly correlated
3 ZNF417 9 28.9 Highly correlated
4 ZNF589 8 28.9 Highly correlated
5 ZNF320 7 28.9 Highly correlated
6 ZNF584 7 99.0 Weakly correlated
7 ZNF175 6 94.0 Weakly correlated
8 ZNF69 4 28.9 Highly correlated
9 ZNF251 3 94.0 Weakly correlated
10 ZNF263 3 180.0 Weakly correlated
11 ZNF597 3 94.0 Weakly correlated
12 ZNF585A 3 99.0 Weakly correlated
13 ZFP57 3 87.0 Weakly correlated
14 ZNF92 3 28.9 Highly correlated
15 ZNF723 3 15.2 Moderately correlated
16 ZNF440 3 28.9 Highly correlated
17 ZKSCAN5 3 160.0 Weakly correlated
18 ZNF257 2 0.0 Weakly correlated
19 ZNF141 2 43.0 Weakly correlated
20 ZNF479 1 6.4 Weakly correlated
21 ZNF28 1 28.9 Highly correlated
22 ZNF816 1 28.9 Highly correlated
23 ZNF485 1 94.0 Weakly correlated
24 ZNF680 1 28.9 Highly correlated
25 ZNF534 1 19.6 Moderately correlated
26 ZNF44 1 43.0 Weakly correlated
27 ZNF18 1 160.0 Weakly correlated
28 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Highly correlated
5 ZNF766 43.0 Weakly correlated