ZRdb KZFP & Repeats
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LTR_LTR5A

  • Name
    LTR5A
  • Repbase
    LTR5A
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000556
Description :

Copies at orthologous sites in gibbons, others specific to great apes.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagggaaaagaaagagagatcagactgtcactgtgtctatgtagaaagggaagacataagagactccattttgaaaaagacctgtactttaaacaattgctttgcntgagatgttgttaatttgtagctttgccccagccactttgccccagccactttgacccaacctggagctcacaaaaacatgtgttgtatgaaatcaaggtttaagggatctagggctgtgcaggacgtgccttgttaacaaaatgtttacaagcagtatacttggtaaaagtcatcgccattctctagtctcaataaaccaggggcacaatgcactgcggaaagccgcagggacctctgcccttgaaagcggggtattgtccaaggtttctccccatgtgatagtctgaaatatggcctcgtgggatgagaaagacctgaccgtcccccagcccgacacccgtaaagggtctgtgctgaggtggattagtaaaagaggaaagcctcttgcagttgagatnagaggaaggccactgtctcctgcctgcccctgggaactgaatgtctcggtataaaacccgattgtacatttgttcaattctgagataggagaaaaaccgccctatggcgggaggcgagacatgtttgcagcaatgctgccttgttattctttactccgctgagatgtttgggtggagagaaacataaatctggcctacgtgcacgtccagncatagtaccttcccttgaacttaattatgacatagattcttttgctcacatgttttnttgctgaccttctccttattatcaccctgctctcctactacattcctttttgctgaaataatgaaaataataatcaataaaaactgagggaactcagaggccggtgccggtgcaggtccttggtgtgctgagcgccggtcccctgggcccactgttgtttctctatactttgtctctgtgtcttatttcttttctcagtctctcgtcccacccgactagaaatacccacaggtgtggaggggcaggccaccccttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 9 99.0 Weakly correlated
2 ZNF766 8 43.0 Weakly correlated
3 ZNF394 7 99.0 Weakly correlated
4 ZNF587 6 28.9 Weakly correlated
5 ZNF417 4 28.9 Weakly correlated
6 ZFP57 3 87.0 Weakly correlated
7 ZNF679 3 28.9 Weakly correlated
8 ZNF589 3 28.9 Weakly correlated
9 ZNF197 3 99.0 Weakly correlated
10 ZIM3 3 87.0 Weakly correlated
11 ZFP69B 3 99.0 Weakly correlated
12 ZKSCAN5 3 160.0 Weakly correlated
13 ZNF175 3 94.0 Weakly correlated
14 ZFP37 3 99.0 Weakly correlated
15 ZKSCAN8 2 160.0 Weakly correlated
16 ZNF584 2 99.0 Weakly correlated
17 ZNF486 2 8.6 Moderately correlated
18 ZNF485 2 94.0 Weakly correlated
19 ZNF816 2 28.9 Weakly correlated
20 ZNF320 2 28.9 Weakly correlated
21 ZNF2 2 99.0 Weakly correlated
22 ZNF28 2 28.9 Weakly correlated
23 ZNF17 2 69.0 Weakly correlated
24 ZNF251 2 94.0 Weakly correlated
25 ZNF8 1 99.0 Weakly correlated
26 ZNF695 1 28.9 Weakly correlated
27 ZNF707 1 74.0 Weakly correlated
28 ZNF723 1 15.2 Moderately correlated
29 ZNF799 1 43.0 Weakly correlated
30 ZNF823 1 43.0 Weakly correlated
31 ZNF680 1 28.9 Weakly correlated
32 ZNF534 1 19.6 Highly correlated
33 ZNF528 1 43.0 Weakly correlated
34 ZNF519 1 19.6 Highly correlated
35 ZNF479 1 6.4 Moderately correlated
36 ZNF471 1 94.0 Weakly correlated
37 ZNF263 1 180.0 Weakly correlated
38 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF417 4 28.9 Weakly correlated
2 ZKSCAN5 3 160.0 Weakly correlated
3 ZFP57 2 87.0 Weakly correlated
4 ZFP69B 2 99.0 Weakly correlated
5 ZNF816 2 28.9 Weakly correlated
6 ZNF28 2 28.9 Weakly correlated
7 ZIM3 1 87.0 Weakly correlated
8 ZNF251 1 94.0 Weakly correlated
9 ZNF479 1 6.4 Moderately correlated
10 ZNF723 1 15.2 Moderately correlated
11 ZNF823 1 43.0 Weakly correlated
12 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats