ZRdb KZFP & Repeats
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LTR_LTR57

  • Name
    LTR57
  • Repbase
    LTR57
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000552
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtgtgacgggtcccccanccaggttacttaagggtgtatgtccgctgcctgaaccctgaaggccgggcggtgagccaaggccatggtgcccagccgaggagcaggtgtccctgagaacccaaacatcccggagagtatctgagaacctaccaaggaaaacagtctcatcgcncacacacagtaggcaaagagccagaaaattagcttaaaagcagcttagagacgggaggcggcgcggatctctagagctgtcctgctgccgcccaggagtgccccgtatgtaagtcctaataaactcatctactcgccaagctggacttgtccgagtcattctttggtctctcggctccttcccagtttggggggaggtattntnncgnatacagtcccaggtttttctcgtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 16 99.0 Weakly correlated
2 ZNF263 7 180.0 Weakly correlated
3 ZKSCAN1 6 160.0 Weakly correlated
4 ZNF766 6 43.0 Weakly correlated
5 ZNF701 6 28.9 Weakly correlated
6 ZNF317 5 99.0 Weakly correlated
7 ZNF394 5 99.0 Weakly correlated
8 ZNF18 4 160.0 Weakly correlated
9 ZNF324 3 99.0 Weakly correlated
10 ZNF441 3 43.0 Weakly correlated
11 ZNF610 3 28.9 Weakly correlated
12 ZNF680 3 28.9 Weakly correlated
13 ZNF597 2 94.0 Weakly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZNF823 2 43.0 Weakly correlated
16 ZNF589 2 28.9 Weakly correlated
17 ZNF549 2 87.0 Weakly correlated
18 ZNF584 2 99.0 Weakly correlated
19 ZNF558 2 99.0 Weakly correlated
20 ZNF563 2 28.9 Weakly correlated
21 ZNF641 2 99.0 Weakly correlated
22 ZNF2 2 99.0 Weakly correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZNF197 2 99.0 Weakly correlated
25 ZFP69B 2 99.0 Weakly correlated
26 ZNF669 1 43.0 Weakly correlated
27 ZNF695 1 28.9 Weakly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF75A 1 94.0 Weakly correlated
30 ZNF792 1 94.0 Weakly correlated
31 ZNF479 1 6.4 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF534 1 19.6 Weakly correlated
34 ZNF486 1 8.6 Weakly correlated
35 ZNF485 1 94.0 Weakly correlated
36 ZNF30 1 94.0 Weakly correlated
37 ZNF28 1 28.9 Weakly correlated
38 ZNF282 1 319.0 Weakly correlated
39 ZNF264 1 99.0 Weakly correlated
40 ZNF257 1 0.0 Weakly correlated
41 ZNF182 1 99.0 Weakly correlated
42 ZNF175 1 94.0 Weakly correlated
43 ZNF140 1 99.0 Weakly correlated
44 ZNF101 1 43.0 Weakly correlated
45 ZKSCAN8 1 160.0 Weakly correlated
46 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 3 160.0 Weakly correlated
2 ZNF549 2 87.0 Weakly correlated
3 ZFP37 1 99.0 Weakly correlated
4 ZNF264 1 99.0 Weakly correlated
5 ZNF554 1 99.0 Weakly correlated
6 ZNF101 1 43.0 Weakly correlated
7 ZNF641 1 99.0 Weakly correlated
8 ZNF695 1 28.9 Weakly correlated
9 ZNF563 1 28.9 Weakly correlated
10 ZNF792 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats