ZRdb KZFP & Repeats
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LTR_LTR57-INT

  • Name
    LTR57-INT
  • Repbase
    HERV57I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000553
Description :

Associated with LTR57. The element may be autonomous with coding regionsfor gag and pol between bp 1724 - 4161.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attggcatcacgaacaggatccgagagaccaaatgatgagtcaggaaggggcgtctgcggggggaatcccggggtggtcggcaacatgcatgtggggtggagttgcccaactgctcaacctttgtgggccgccgcgtgagtacggggacgctcggaaaacgccggcggggactgagcacntattgcaagaagctaagatattaaagtacgataaggatagcaaacgcgctgttgttgcaataaggctggctactgagaaatcgttagagcaggaaagggagaaagggtagaaactcctgcagaagttcaaaggcatgccaggttttctgggactccagctggttacatattatggcccgttcttgtgcacattttnaaactgatgggcaaattacagcaagaaaaatnnntcagagctcaaatggttaacctgcaactatagagttaagtagagtcttctaaagctctctgtttctctnttttcttttctgcctgctttgaatctgctgttattaagctactggtgttgagataaaactcactgtttatggtactactaattcaaggctacttggagattttgtttttcttatacagttcagccagttctagctaaaatgtaaacattgaaactcatttgaaactgaaaaaaaaggggtaaaagaggttttttaaaaatcaaactgccatggaaactgctttacccaaaattttggtccacagccttcattggattacctatcggggcaaacaaagtttagccatgtgaacaggtcccaattttgtcagaaataatttggatccagctatcttttgtaaantagtgagtttgtgntgctgtctcatggctagagttccgaggtaaaagctattggatctttgtgtgtgtgtgtatatacgtgtttanatgtattgtgtatgtacatgtgttatatgttgtgtctagcatgctaccaaattggcttataagtaaatgagtactcagtaaagtccaaatgcttttcaagttcacgtganttnagtaatctttgataaataagctggctttaaaattattggtaaaataaaaatagaaatgtcttcagaattgtcagcatacatttttgtctgggtttactgattagataagttttatatttgcctctgctagatattttaaggtgtcagggtttggcataaaggttataagactataaacccagccaaaaacagaatgatctttgtttgtgtgatttttttgataaataagactaatttaatattgttggttcaatgaaaacagctgaatcttctgagttatcggcaaaaatgcccatgtgtttaactttaaggttcttacttaggtgaacacctgatattcacaggctataaaaatggttaacagggaaataacttnaaatgatgactagctttgtctaatgtctcggttttcataagtaatctagataaactgctaaaaatgaataaattgagtaaatgtaaatgagataaatgcttgtaggtgaacttttcgtgtaatttaaaatcttaaaattattttaggtactcattgaatgtctgggtcatttccaattnaaaaagggttatgatatggggcattggtcgcacttctgagcccgttaatgggaaataaaatctgtgatatgggggaagcattggcggacctcagtgagctggataaaaacaaggaccgagtccagaaagtaatcaaggaacaaaaaggggatgggccaaatgggtgcctgtacacttgccccggcccaggcaggcaatgaacgtgaaacaataccgcctgccagggggacactctgaaatcacccaaacaatccaggaattacataaggtacaaatagcccagagcccctataacagccctgtgtggcctgtgaagaagccagatggcacctggagaatgacggtagactaccgtgagctaaacaaagtggtgccccctgtacatgcagctgtacccaatattgctcaactgctagagcaagtggtccttaagctgggaaatgtccatgctgtgattgacttggctaatgccttttccagtattcctttagcagaagattcacaagaccagtttgccttcacttaggagggccaacaatggactttccaggtgctaccacaagggtacctgcacagccccaccatctgtcacggtatggttgcacaggacctgtctagactctctttgcctgcctcggtctccctgtttcactatattaatgataacatgctaacctcagagtctcttacagatctggagactgccctacaaaccgtcttggatggcctaaaaggacaggggatgggaagtcaaccccaaaaagatacaggggcccggcgtagccgtcaaattcctgagagttacctggttgggtaagacgtgaaacatacccagagctgtcattgataagatagcacagcagcctgttccccagacagtaaagcaactccaggttttcctaggtttactgggctactggaggatattcattcctcatttggcacaaaccctccgcccattatacaccctaataaagaaaggtaaaaaatgggactggacacacatagagcaagaggcatttgacaaagcaaaaatattggtgaaacaagcccaagcactaggggccccactgccacagcacccttttgtattagaagtcactagagatgccacagggatgaattggggtttgtggcaaaagcaaccaacgggaatggtacctgtagggttttggtctcaattatggaagggggcagaatcccactatacagtcctagagcaacagctattggccatgtatagggcattgcaacaagcggaggccatcaccagaaagcagaccgtcacagtaaaaactgcctaccccataaaagggtgaatggaaggcctcctagccaagcccacctccggggtggcacaatcacacaccctgcagaaatggcacgcctatctacaacaaaggggtgtcttgtccactagtcctttaagtcaggcactacaggaggtgctcggacccatccactttgaacaagtggagggggccgacatggcagtggagccacctaccaggccaaccaccatatatgaggggaccccgccgatacccgctagggcctggtacactgatgggtctagcaaaggcacccaacaccaatggtcagcggtcgtggtgcaaatggacactgacaccatatggatagaatggggattaggacaaagcagtcaatgggccgagctacgggcagtttggatactcatcacccacgagccctggccactagtcacttgcacagatagttgggctacatacagaggccttaccatgtggatcaatcaatgggccgcagacagttggcaggtttggggcaggcccctttggggaacgtccatgtggcaggacgtccacatcaggttacaagagaaggatgcccgtcttacggtgtaccatgtggatgcacacagccccaagtcgcctcccggaaatcaggaggcagacgcccttactcattcncgtncgggcaatttgcccgagcccattggaggaggctgccatatgggtacatcataagagcggccaccggggggcagccacggggtgggccatagcaaaggcagcaggcatccctatccaatatgcagatgttctggcagctgttcagaaccgtgagacctgttcatggctgcgacctagaaaggttccctccgcaccaggtcacatacatcgagccatacaacctgtgcgggactggcaagtcgattatattggccccccgccccagagtggagggaaaaggtatgccttaacctgtgtggacacaacaacggggctgctacaggccttcccagtaaaacgtgccactcaactggagaccatcaagtgtctcaccgctcttagttcatgtatggcatgccaagaaggatagatagtgatcagggcccccattcacgggccatgatatccaacactgggcatcagaacaaaacatagactggaggttccacttaccatataacccaacaggggcaggcctcatagaaaaaaaaagaatggcctgttaaaaacccaattacgtgcactgtcccaggacggctctttaaggtcctggactaagaatctccctgaagccatacaaactttaaatgagtcacccactaccacacatggcatcactccctatgaatggttggcaaggcctgtaaaacaggccccgcaaactctcagggttacctctgagacnccgagccatgctcctgaagcagatggccagaccgtgctcctgagaacaccagtggatctgccaagtggcgatggctacgtggacctgaagttgagctggaaagtgcccccatactggatcggttttatggcaccggagggcgccatgaagactgccggaggggaggtggtcccagctgtgctccttgatggaggtccgagagccttacgatatcaacacgcggcagcaccaatacctgctggagcggtcatagtgcggatagcgtgggcaaggccggaaacttaccaattggctattatgcccgctcctagggagggaagccatgtgtggtactgtaagccaggcctgaagcccgcggtggcgnctccctaatagggccaatgggagaaaatacagcggtaataatgttacaaggagtggatacacccatgagggtccctactaaacacctgtgtttatgcccataggctgttgttcctgctacccatggcagctggtaatgtcttcctggactgggctgcgactacagcagcagtcagcaaccagtccgattgttgggtatatggatacctccccctgtcaaatgataatggtatgccttggaatattctgcctttctcccgacagaactggagtgactggttcaacagcaccgataatgcaacccgggctcactggggattgcntccacccggaggcccgatcgccaacncgacggagacccaacaacatgtgcccttataggcgctacctgttgcgcctatatccctgatgaagagaataatgtcacagatgctttaaatcatttgtcaactcagatccatgatatagcccaattaggtttctttgactcattctcaaattggttacacaccttacctactcattggagttatgttttgctaataggcatcataattgtagttagcttctgctttttatgctgttgtgtatactgtggatgtggcctgtacgcacaagccatggctatacgttataggcccgtatagttcttcccctcgtaccccgctcagggactctcacgcaagattggcggaaagaatgtaagagctgggggacggggtggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 24 99.0 Weakly correlated
2 ZNF547 5 74.0 Highly correlated
3 ZNF263 5 180.0 Weakly correlated
4 ZNF679 5 28.9 Weakly correlated
5 ZNF554 4 99.0 Weakly correlated
6 ZNF680 3 28.9 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZNF479 2 6.4 Weakly correlated
10 ZNF317 2 99.0 Weakly correlated
11 ZNF28 2 28.9 Weakly correlated
12 ZNF75D 2 94.0 Weakly correlated
13 ZNF273 2 28.9 Weakly correlated
14 ZNF101 2 43.0 Weakly correlated
15 ZNF793 2 99.0 Weakly correlated
16 ZFP28 2 99.0 Weakly correlated
17 ZNF808 1 19.6 Weakly correlated
18 ZNF730 1 19.6 Weakly correlated
19 ZNF626 1 0.0 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF585B 1 99.0 Weakly correlated
22 ZNF559 1 74.0 Highly correlated
23 ZNF519 1 19.6 Weakly correlated
24 ZNF485 1 94.0 Weakly correlated
25 ZNF429 1 28.9 Weakly correlated
26 ZNF394 1 99.0 Weakly correlated
27 ZNF331 1 94.0 Weakly correlated
28 ZNF320 1 28.9 Weakly correlated
29 ZNF287 1 99.0 Weakly correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF257 1 0.0 Weakly correlated
32 ZKSCAN1 1 160.0 Weakly correlated
33 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 2 28.9 Weakly correlated
2 ZNF485 1 94.0 Weakly correlated
3 ZNF679 1 28.9 Weakly correlated
4 ZNF320 1 28.9 Weakly correlated
5 ZNF730 1 19.6 Weakly correlated
6 ZNF382 1 99.0 Weakly correlated
7 ZNF317 1 99.0 Weakly correlated
8 ZNF808 1 19.6 Weakly correlated
9 ZNF793 1 99.0 Weakly correlated
10 ZNF626 1 0.0 Weakly correlated
11 ZNF287 1 99.0 Weakly correlated
12 ZFP28 1 99.0 Weakly correlated
13 ZNF429 1 28.9 Weakly correlated
14 ZNF554 1 99.0 Weakly correlated
15 ZNF273 1 28.9 Weakly correlated
16 ZNF680 1 28.9 Weakly correlated
17 ZNF479 1 6.4 Weakly correlated
18 ZNF263 1 180.0 Weakly correlated
19 ZNF101 1 43.0 Weakly correlated
20 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats