ZRdb KZFP & Repeats
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LTR_LTR56

  • Name
    LTR56
  • Repbase
    LTR56
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000551
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaannaagaaaagaacttttatctgaggaatgcgagtcctttaaattatcaggcccagagaggcattaaaatgagacagcagtcacgtcctactccccgctttgagctatgtattncatctcttgaaactgcttgctattgccacaagtagctataaattaacctaataatgccacaccggacactataacccacaccctatagcttaacaatgtatacggccaatcactaatcaatgttatttctgtaaaccaatgagaattcctgacaaacaactttgtatcagcccactccctgtccccctcttttttgcctttaaaaacccgcttgtaacngctgctaancggagcgcatatccagggcaacttggatctgtgctcccgggcngcngtcctcaagctttggcccaaataaactctctacttatattaattttgcctca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 51 99.0 Weakly correlated
2 ZNF766 41 43.0 Weakly correlated
3 ZNF263 20 180.0 Weakly correlated
4 ZNF589 16 28.9 Weakly correlated
5 ZNF816 16 28.9 Weakly correlated
6 ZNF18 14 160.0 Weakly correlated
7 ZNF175 13 94.0 Weakly correlated
8 ZNF584 12 99.0 Weakly correlated
9 ZNF394 11 99.0 Weakly correlated
10 ZNF197 11 99.0 Weakly correlated
11 ZKSCAN1 9 160.0 Weakly correlated
12 ZNF707 9 74.0 Highly correlated
13 ZKSCAN8 9 160.0 Weakly correlated
14 ZNF251 8 94.0 Weakly correlated
15 ZFP57 7 87.0 Weakly correlated
16 ZNF317 6 99.0 Weakly correlated
17 ZNF2 6 99.0 Weakly correlated
18 ZNF679 5 28.9 Weakly correlated
19 ZFP37 5 99.0 Weakly correlated
20 ZNF101 5 43.0 Weakly correlated
21 ZNF274 4 99.0 Weakly correlated
22 ZNF534 4 19.6 Weakly correlated
23 ZNF823 4 43.0 Weakly correlated
24 ZFP69B 4 99.0 Weakly correlated
25 ZNF320 3 28.9 Weakly correlated
26 ZNF257 3 0.0 Weakly correlated
27 ZNF558 3 99.0 Weakly correlated
28 ZIM3 3 87.0 Weakly correlated
29 ZNF506 2 28.9 Weakly correlated
30 ZNF597 2 94.0 Weakly correlated
31 ZNF705B 2 28.9 Weakly correlated
32 ZNF610 2 28.9 Weakly correlated
33 ZNF705D 2 28.9 Weakly correlated
34 ZNF671 2 94.0 Weakly correlated
35 ZNF528 2 43.0 Weakly correlated
36 ZNF680 2 28.9 Weakly correlated
37 ZNF479 2 6.4 Weakly correlated
38 ZNF441 2 43.0 Weakly correlated
39 ZNF723 2 15.2 Weakly correlated
40 ZNF140 2 99.0 Weakly correlated
41 ZNF778 2 74.0 Highly correlated
42 ZNF282 2 319.0 Weakly correlated
43 ZNF793 2 99.0 Weakly correlated
44 ZFP14 1 99.0 Weakly correlated
45 ZNF91 1 6.0 Weakly correlated
46 ZNF701 1 28.9 Weakly correlated
47 ZNF730 1 19.6 Weakly correlated
48 ZNF8 1 99.0 Weakly correlated
49 ZNF700 1 28.9 Weakly correlated
50 ZNF695 1 28.9 Weakly correlated
51 ZNF92 1 28.9 Weakly correlated
52 ZNF324 1 99.0 Weakly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
54 ZNF133 1 99.0 Weakly correlated
55 ZNF141 1 43.0 Weakly correlated
56 ZNF157 1 99.0 Weakly correlated
57 ZNF182 1 99.0 Weakly correlated
58 ZNF264 1 99.0 Weakly correlated
59 ZNF284 1 43.0 Weakly correlated
60 ZNF28 1 28.9 Weakly correlated
61 ZNF684 1 99.0 Weakly correlated
62 ZNF350 1 99.0 Weakly correlated
63 ZNF485 1 94.0 Weakly correlated
64 ZNF549 1 87.0 Weakly correlated
65 ZNF554 1 99.0 Weakly correlated
66 ZNF565 1 99.0 Weakly correlated
67 ZNF616 1 43.0 Weakly correlated
68 ZNF674 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF816 9 28.9 Weakly correlated
2 ZNF263 7 180.0 Weakly correlated
3 ZNF707 5 74.0 Highly correlated
4 ZFP57 3 87.0 Weakly correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZNF101 2 43.0 Weakly correlated
7 ZNF584 2 99.0 Weakly correlated
8 ZNF140 2 99.0 Weakly correlated
9 ZNF766 2 43.0 Weakly correlated
10 ZNF317 1 99.0 Weakly correlated
11 ZFP14 1 99.0 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF175 1 94.0 Weakly correlated
14 ZNF589 1 28.9 Weakly correlated
15 ZNF197 1 99.0 Weakly correlated
16 ZNF558 1 99.0 Weakly correlated
17 ZNF680 1 28.9 Weakly correlated
18 ZNF674 1 99.0 Weakly correlated
19 ZNF671 1 94.0 Weakly correlated
20 ZKSCAN5 1 160.0 Weakly correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZNF684 1 99.0 Weakly correlated
23 ZNF479 1 6.4 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats