ZRdb KZFP & Repeats
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LTR_LTR55

  • Name
    LTR55
  • Repbase
    LTR55
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000550
Description :

LTR55 family can be split into two minor subfamilies based on multiplediagnostic positions.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttatataaatgagccaaagatggcctctgtgtattggcccctaggttgtttatttcttcacngcaggctgagacccgttagctcaaaagcccgccggcgccaaactcaaatttttacacatccanattgttttaaanatagcccaaacaagcagatttttagccatttagagcctgcctgctttgcataccccgcgaaaccgcacccaacatctgctagccattgcacttataagaccccaagccgctgctgcccttcggagctctctgacccagagactccccgnccgtgctgctgagcgacatcacctagacacgtaagccccctctccgattcccctctcccccgggagttcccttgccctcctccccttctgggtggtggccccgntccctaagcctctggacggtctcntgctgtgagggacttccccttcatgcaancctgtcnaagcgccgcccaataaagcttgttgtgtgctactgccncttcgtggtcatatctttttccttgatcagcccccaaatccctcgaaccccctacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 53 99.0 Highly correlated
2 ZNF766 51 43.0 Weakly correlated
3 ZNF263 42 180.0 Weakly correlated
4 ZNF2 34 99.0 Highly correlated
5 ZNF425 28 94.0 Moderately correlated
6 ZFP37 26 99.0 Highly correlated
7 ZKSCAN1 26 160.0 Weakly correlated
8 ZNF197 22 99.0 Highly correlated
9 ZNF394 22 99.0 Highly correlated
10 ZNF18 21 160.0 Weakly correlated
11 ZNF589 20 28.9 Weakly correlated
12 ZNF584 20 99.0 Highly correlated
13 ZNF610 18 28.9 Weakly correlated
14 ZNF324 17 99.0 Highly correlated
15 ZNF175 17 94.0 Moderately correlated
16 ZFP69B 15 99.0 Highly correlated
17 ZKSCAN8 15 160.0 Weakly correlated
18 ZNF558 12 99.0 Highly correlated
19 ZNF793 11 99.0 Highly correlated
20 ZNF479 9 6.4 Weakly correlated
21 ZNF695 8 28.9 Weakly correlated
22 ZNF274 8 99.0 Highly correlated
23 ZNF554 7 99.0 Highly correlated
24 ZNF528 7 43.0 Weakly correlated
25 ZNF317 7 99.0 Highly correlated
26 ZNF506 7 28.9 Weakly correlated
27 ZNF679 7 28.9 Weakly correlated
28 ZNF701 7 28.9 Weakly correlated
29 ZNF534 6 19.6 Weakly correlated
30 ZNF680 6 28.9 Weakly correlated
31 ZNF519 6 19.6 Weakly correlated
32 ZNF597 6 94.0 Moderately correlated
33 ZNF257 5 0.0 Weakly correlated
34 ZNF705B 4 28.9 Weakly correlated
35 ZNF101 4 43.0 Weakly correlated
36 ZNF133 4 99.0 Highly correlated
37 ZNF251 4 94.0 Moderately correlated
38 ZNF28 4 28.9 Weakly correlated
39 ZNF490 3 43.0 Weakly correlated
40 ZNF75D 3 94.0 Moderately correlated
41 ZNF202 3 160.0 Weakly correlated
42 ZNF485 3 94.0 Moderately correlated
43 ZNF273 3 28.9 Weakly correlated
44 ZNF93 2 8.6 Weakly correlated
45 ZNF510 2 99.0 Highly correlated
46 ZNF8 2 99.0 Highly correlated
47 ZNF547 2 74.0 Weakly correlated
48 ZNF792 2 94.0 Moderately correlated
49 ZNF778 2 74.0 Weakly correlated
50 ZNF705D 2 28.9 Weakly correlated
51 ZNF682 2 28.9 Weakly correlated
52 ZIM3 2 87.0 Moderately correlated
53 ZNF264 2 99.0 Highly correlated
54 ZNF230 2 28.9 Weakly correlated
55 ZNF486 2 8.6 Weakly correlated
56 ZNF140 2 99.0 Highly correlated
57 ZNF320 2 28.9 Weakly correlated
58 ZNF347 2 43.0 Weakly correlated
59 ZKSCAN5 2 160.0 Weakly correlated
60 ZNF468 2 28.9 Weakly correlated
61 ZNF132 1 94.0 Moderately correlated
62 ZNF780A 1 43.0 Weakly correlated
63 ZNF135 1 94.0 Moderately correlated
64 ZNF136 1 74.0 Weakly correlated
65 ZNF764 1 160.0 Weakly correlated
66 ZNF12 1 99.0 Highly correlated
67 ZNF816 1 28.9 Weakly correlated
68 ZNF75A 1 94.0 Moderately correlated
69 ZNF141 1 43.0 Weakly correlated
70 ZNF189 1 99.0 Highly correlated
71 ZNF92 1 28.9 Weakly correlated
72 ZNF287 1 99.0 Highly correlated
73 ZNF267 1 43.0 Weakly correlated
74 ZNF282 1 319.0 Weakly correlated
75 ZNF674 1 99.0 Highly correlated
76 ZNF671 1 94.0 Moderately correlated
77 ZNF641 1 99.0 Highly correlated
78 ZNF611 1 19.6 Weakly correlated
79 ZNF34 1 99.0 Highly correlated
80 ZNF354A 1 99.0 Highly correlated
81 ZNF567 1 99.0 Highly correlated
82 ZNF429 1 28.9 Weakly correlated
83 ZNF441 1 43.0 Weakly correlated
84 ZNF550 1 94.0 Moderately correlated
85 ZNF445 1 99.0 Highly correlated
86 ZNF44 1 43.0 Weakly correlated
87 ZNF529 1 99.0 Highly correlated
88 ZNF483 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF2 12 99.0 Highly correlated
2 ZNF263 10 180.0 Weakly correlated
3 ZNF197 8 99.0 Highly correlated
4 ZNF584 8 99.0 Highly correlated
5 ZNF589 8 28.9 Weakly correlated
6 ZNF175 7 94.0 Moderately correlated
7 ZNF793 6 99.0 Highly correlated
8 ZNF506 6 28.9 Weakly correlated
9 ZNF597 5 94.0 Moderately correlated
10 ZNF766 5 43.0 Weakly correlated
11 ZNF479 3 6.4 Weakly correlated
12 ZNF485 2 94.0 Moderately correlated
13 ZNF75D 2 94.0 Moderately correlated
14 ZNF425 2 94.0 Moderately correlated
15 ZNF257 2 0.0 Weakly correlated
16 ZNF468 2 28.9 Weakly correlated
17 ZNF534 1 19.6 Weakly correlated
18 ZNF75A 1 94.0 Moderately correlated
19 ZNF274 1 99.0 Highly correlated
20 ZNF671 1 94.0 Moderately correlated
21 ZNF347 1 43.0 Weakly correlated
22 ZNF695 1 28.9 Weakly correlated
23 ZNF282 1 319.0 Weakly correlated
24 ZNF133 1 99.0 Highly correlated
25 ZFP69B 1 99.0 Highly correlated
26 ZNF641 1 99.0 Highly correlated
27 ZNF18 1 160.0 Weakly correlated
28 ZNF483 1 99.0 Highly correlated
29 ZNF251 1 94.0 Moderately correlated
30 ZNF141 1 43.0 Weakly correlated
31 ZKSCAN5 1 160.0 Weakly correlated
32 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF197 99.0 Highly correlated
3 ZNF2 99.0 Highly correlated
4 ZNF584 99.0 Highly correlated
5 ZNF589 28.9 Weakly correlated